Alain Aminot

Bio: Alain Aminot is an academic researcher from IFREMER. The author has contributed to research in topics: Seawater & Phosphorus. The author has an hindex of 29, co-authored 58 publications receiving 3509 citations.

A simple and precise method for measuring ammonium in marine and freshwater ecosystems

Abstract: The accurate measurement of ammonium concentrations is fundamental to understanding nitrogen biogeochemistry in aquatic ecosystems. Unfortunately, the commonly used indophenol blue method often yie...

Phosphorus Forms Related to Sediment Grain Size and Geochemical Characteristics in French Coastal Areas

Abstract: Phosphorus forms with respect to sediment characteristics, such as grain-size, and major chemical elements, were studied in French coastal marine areas (the Bay of Seine and the Loire and Gironde Estuaries). In the three areas, Fe/Al-bound phosphate (Fe/Al-P) and exchangeable phosphate (exch-P) were significantly related to the proportion of fine fraction ( Calcium-bound phosphate (Ca-P) was found in all grain size classes with comparable concentrations in the Bay of Seine where there was no correlation between Ca-P and Ca. This corresponded to the calcium's marine origin (shells) in the Bay of Seine. In contrast, the correlation of Ca-P with Ca and the fine fraction of the sediment in the Loire and Gironde Estuaries was characteristic of the predominant metamorphic origin of Ca-P in these areas. Useful information for interpretation of P-forms can be obtained from major sediment characteristics. Thus, for areas where specific relationships have previously been established good estimates of P-forms could be predicted from sediment properties.

Dynamics of particulate organic matter d15N and d13C during spring phytoplankton blooms in a macrotidal ecosystem (Bay of Seine, France)

Abstract: Two cruises (April and June 1997) were carried out in the Bay of Seine, a nitrate- and ammonium-enriched ecosystem of Western Europe, to identify the major mechanisms that control δ 15 N and δ 13 C in spring particulate organic matter (POM). Particulate organic nitrogen (PON) δ 15 N ranged between 0.8 and 5.2 ‰ in April and between 2.2 and 6.2 ‰ in June, while particulate organic carbon (POC) δ 13 C ranged between -24.3 and -19.7‰, and between -20.0 and -16.2‰ during the same periods. During spring 1997, POM was highly dominated by autochthonous phytoplankton. It is shown that the variation of PON δ 15 N is due to both nitrate mixing between river and marine waters and fractionation of N stable isotopes during nitrate utilization by phytoplankton. Therefore, similarly to what was previously shown for open ocean, δ 15 N can be used as a proxy of spring fractional nitrate utilization in coastal ecosystems. It is also shown that POC δ 13 C in spring is controlled by POC con- centration and C:N ratio (in addition to 'temperature effects'), which are considered here as indica- tors of primary production and phytoplankton degradation, respectively. The co-variation of δ 13 C and δ 15 N describes the spring phytoplankton dynamics: at the start of phytoplankton development, nitrate concentration is high (low δ 15 N) and phytoplankton production is low (low δ 13 C); then primary pro- duction increases (δ 13 C becomes higher) and the nitrate pool diminishes (δ 15 N becomes higher); at a later stage, the nitrate pool is depleted (high δ 15 N), part of the phytoplankton becomes degraded and production is still high (high δ 13 C).

Our evolving conceptual model of the coastal eutrophication problem

Abstract: A primary focus of coastal science during the past 3 decades has been the question: How does anthropogenic nutrient enrichment cause change in the structure or function of nearshore coastal ecosystems? This theme of environmental science is recent, so our conceptual model of the coastal eutrophication problem continues to change rapidly In this review, I suggest that the early (Phase I) con- ceptual model was strongly influenced by limnologists, who began intense study of lake eutrophication by the 1960s The Phase I model emphasized changing nutrient input as a signal, and responses to that signal as increased phytoplankton biomass and primary production, decomposition of phytoplankton- derived organic matter, and enhanced depletion of oxygen from bottom waters Coastal research in recent decades has identified key differences in the responses of lakes and coastal-estuarine ecosystems to nutrient enrichment The contemporary (Phase II) conceptual model reflects those differences and includes explicit recognition of (1) system-specific attributes that act as a filter to modulate the responses to enrichment (leading to large differences among estuarine-coastal systems in their sensitivity to nu- trient enrichment); and (2) a complex suite of direct and indirect responses including linked changes in: water transparency, distribution of vascular plants and biomass of macroalgae, sediment biogeochem- istry and nutrient cycling, nutrient ratios and their regulation of phytoplankton community composition, frequency of toxic/harmful algal blooms, habitat quality for metazoans, reproduction/growth/survival of pelagic and benthic invertebrates, and subtle changes such as shifts in the seasonality of ecosystem functions Each aspect of the Phase II model is illustrated here with examples from coastal ecosystems around the world In the last section of this review I present one vision of the next (Phase III) stage in the evolution of our conceptual model, organized around 5 questions that will guide coastal science in the early 21st century: (1) How do system-specific attributes constrain or amplify the responses of coastal ecosystems to nutrient enrichment? (2) How does nutrient enrichment interact with other stressors (toxic contaminants, fishing harvest, aquaculture, nonindigenous species, habitat loss, climate change, hydro- logic manipulations) to change coastal ecosystems? (3) How are responses to multiple stressors linked? (4) How does human-induced change in the coastal zone impact the Earth system as habitat for humanity and other species? (5) How can a deeper scientific understanding of the coastal eutrophication problem be applied to develop tools for building strategies at ecosystem restoration or rehabilitation?

Harmful Algal Blooms and Eutrophication: Nutrient Sources, Composition, and Consequences

Abstract: Although algal blooms, including those considered toxic or harmful, can be natural phenomena, the nature of the global problem of harmful algal blooms (HABs) has expanded both in extent and its public perception over the last several decades. Of concern, especially for resource managers, is the potential relationship between HABs and the accelerated eutrophication of coastal waters from human activities. We address current insights into the relationships between HABs and eutrophication, focusing on sources of nutrients, known effects of nutrient loading and reduction, new understanding of pathways of nutrient acquisition among HAB species, and relationships between nutrients and toxic algae. Through specific, regional, and global examples of these various relationships, we offer both an assessment of the state of understanding, and the uncertainties that require future research efforts. The sources of nutrients poten- tially stimulating algal blooms include sewage, atmospheric deposition, groundwater flow, as well as agricultural and aquaculture runoff and discharge. On a global basis, strong correlations have been demonstrated between total phos- phorus inputs and phytoplankton production in freshwaters, and between total nitrogen input and phytoplankton pro- duction in estuarine and marine waters. There are also numerous examples in geographic regions ranging from the largest and second largest U.S. mainland estuaries (Chesapeake Bay and the Albemarle-Pamlico Estuarine System), to the Inland Sea of Japan, the Black Sea, and Chinese coastal waters, where increases in nutrient loading have been linked with the development of large biomass blooms, leading to anoxia and even toxic or harmful impacts on fisheries re- sources, ecosystems, and human health or recreation. Many of these regions have witnessed reductions in phytoplankton biomass (as chlorophyll a) or HAB incidence when nutrient controls were put in place. Shifts in species composition have often been attributed to changes in nutrient supply ratios, primarily N:P or N:Si. Recently this concept has been extended to include organic forms of nutrients, and an elevation in the ratio of dissolved organic carbon to dissolved organic nitrogen (DOC:DON) has been observed during several recent blooms. The physiological strategies by which different groups of species acquire their nutrients have become better understood, and alternate modes of nutrition such as heterotrophy and mixotrophy are now recognized as common among HAB species. Despite our increased un- derstanding of the pathways by which nutrients are delivered to ecosystems and the pathways by which they are assimilated differentially by different groups of species, the relationships between nutrient delivery and the development of blooms and their potential toxicity or harmfulness remain poorly understood. Many factors such as algal species presence/ abundance, degree of flushing or water exchange, weather conditions, and presence and abundance of grazers contribute to the success of a given species at a given point in time. Similar nutrient loads do not have the same impact in different environments or in the same environment at different points in time. Eutrophication is one of several mechanisms by which harmful algae appear to be increasing in extent and duration in many locations. Although important, it is not the only explanation for blooms or toxic outbreaks. Nutrient enrichment has been strongly linked to stimulation of some harmful species, but for others it has not been an apparent contributing factor. The overall effect of nutrient over- enrichment on harmful algal species is clearly species specific.

Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria

Abstract: The discovery of ammonia oxidation by mesophilic and thermophilic Crenarchaeota and the widespread distribution of these organisms in marine and terrestrial environments indicated an important role for them in the global nitrogen cycle. However, very little is known about their physiology or their contribution to nitrification. Here we report oligotrophic ammonia oxidation kinetics and cellular characteristics of the mesophilic crenarchaeon 'Candidatus Nitrosopumilus maritimus' strain SCM1. Unlike characterized ammonia-oxidizing bacteria, SCM1 is adapted to life under extreme nutrient limitation, sustaining high specific oxidation rates at ammonium concentrations found in open oceans. Its half-saturation constant (K(m) = 133 nM total ammonium) and substrate threshold (

A simple and precise method for measuring ammonium in marine and freshwater ecosystems

Abstract: The accurate measurement of ammonium concentrations is fundamental to understanding nitrogen biogeochemistry in aquatic ecosystems. Unfortunately, the commonly used indophenol blue method often yie...

Abundance and diversity of denitrifying and anammox bacteria in seasonally hypoxic and sulfidic sediments of the saline lake Grevelingen

Abstract: Denitrifying and anammox bacteria are involved in the nitrogen cycling in marine sediments but the environmental factors that regulate the relative importance of these processes are not well constrained. Here, we evaluated the abundance, diversity, and potential activity of denitrifying, anammox, and sulfide-dependent denitrifying bacteria in the sediments of the seasonally hypoxic saline Lake Grevelingen, known to harbor an active microbial community involved in sulfur oxidation pathways. Depth distributions of 16S rRNA gene, nirS gene of denitrifying and anammox bacteria, aprA gene of sulfur-oxidizing and sulfate-reducing bacteria, and ladderane lipids of anammox bacteria were studied in sediments impacted by seasonally hypoxic bottom waters. Samples were collected down to 5 cm depth (1 cm resolution) at three different locations before (March) and during summer hypoxia (August). The abundance of denitrifying bacteria did not vary despite of differences in oxygen and sulfide availability in the sediments, whereas anammox bacteria were more abundant in the summer hypoxia but in those sediments with lower sulfide concentrations. The potential activity of denitrifying and anammox bacteria as well as of sulfur-oxidizing, including sulfide-dependent denitrifiers and sulfate-reducing bacteria, was potentially inhibited by the competition for nitrate and nitrite with cable and/or Beggiatoa-like bacteria in March and by the accumulation of sulfide in the summer hypoxia. The simultaneous presence and activity of organoheterotrophic denitrifying bacteria, sulfide-dependent denitrifiers, and anammox bacteria suggests a tight network of bacteria coupling carbon-, nitrogen-, and sulfur cycling in Lake Grevelingen sediments.