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Alex H. de Vries
Researcher at University of Groningen
Publications - 52
Citations - 4914
Alex H. de Vries is an academic researcher from University of Groningen. The author has contributed to research in topics: Membrane & Lipid bilayer. The author has an hindex of 27, co-authored 52 publications receiving 3854 citations.
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Journal ArticleDOI
Lipid organization of the plasma membrane.
Helgi I. Ingólfsson,Manuel N. Melo,Floris J. van Eerden,Clement Arnarez,Cesar A. Lopez,Tsjerk A. Wassenaar,Tsjerk A. Wassenaar,Xavier Periole,Alex H. de Vries,D. Peter Tieleman,Siewert J. Marrink +10 more
TL;DR: In this paper, the authors provided a high-resolution view of the lipid organization of a plasma membrane at an unprecedented level of complexity by combining 14 types of headgroups and 11 types of tails asymmetrically distributed across the two leaflets, closely mimicking an idealized mammalian plasma membrane.
Journal ArticleDOI
Lipids on the move: simulations of membrane pores, domains, stalks and curves.
TL;DR: This review describes the state-of-the-art of computer simulation studies of lipid membranes, showing that many important biological processes including self-aggregation of membrane components into domains, the formation of non-lamellar phases, and membrane poration and curving, are now amenable to detailed simulation studies.
Journal ArticleDOI
Martini Coarse-Grained Force Field: Extension to Carbohydrates
Cesar A. Lopez,Andrzej J. Rzepiela,Alex H. de Vries,Lubbert Dijkhuizen,Philippe H. Hünenberger,Siewert J. Marrink +5 more
TL;DR: Application of the new coarse-grained carbohydrate model to the oligosaccharides amylose and Curdlan shows a preservation of the main structural properties with 3 orders of magnitude more efficient sampling than the atomistic counterpart.
Journal ArticleDOI
A Coarse-Grained Model for Polyethylene Oxide and Polyethylene Glycol: Conformation and Hydrodynamics
TL;DR: Simulations of PEO grafted to a nonadsorbing surface yield a mushroom to brush transition that is well described by the Alexander-de Gennes formalism.
Journal ArticleDOI
Martini 3 : A general purpose force field for coarse-grained molecular dynamics
Paulo C. T. Souza,Paulo C. T. Souza,Riccardo Alessandri,Jonathan Barnoud,Jonathan Barnoud,Sebastian Thallmair,Sebastian Thallmair,Ignacio Faustino,Fabian Grünewald,Ilias Patmanidis,Haleh Abdizadeh,Bart M H Bruininks,Tsjerk A. Wassenaar,Peter C. Kroon,Josef Melcr,Vincent Nieto,Valentina Corradi,Hanif M. Khan,Hanif M. Khan,Jan Domański,Jan Domański,Matti Javanainen,Hector Martinez-Seara,Nathalie Reuter,Robert B. Best,Ilpo Vattulainen,Luca Monticelli,Xavier Periole,D. Peter Tieleman,Alex H. de Vries,Siewert J. Marrink +30 more
TL;DR: The coarse-grained Martini force field is widely used in biomolecular simulations as discussed by the authors, which allows accurate predictions of molecular packing and interactions in general, exemplified with a vast and diverse set of applications, ranging from oil/water partitioning and miscibility data to complex molecular systems, involving protein-protein and protein-lipid interactions and material science applications as ionic liquids and aedamers.