Ana Fred

Bio: Ana Fred is an academic researcher from Instituto Superior Técnico. The author has contributed to research in topics: Cluster analysis & Correlation clustering. The author has an hindex of 32, co-authored 219 publications receiving 5429 citations. Previous affiliations of Ana Fred include University of Lisbon & Technical University of Lisbon.

Combining Multiple Clusterings Using Evidence Accumulation

Abstract: We explore the idea of evidence accumulation (EAC) for combining the results of multiple clusterings. First, a clustering ensemble?a set of object partitions, is produced. Given a data set (n objects or patterns in d dimensions), different ways of producing data partitions are: 1) applying different clustering algorithms and 2) applying the same clustering algorithm with different values of parameters or initializations. Further, combinations of different data representations (feature spaces) and clustering algorithms can also provide a multitude of significantly different data partitionings. We propose a simple framework for extracting a consistent clustering, given the various partitions in a clustering ensemble. According to the EAC concept, each partition is viewed as an independent evidence of data organization, individual data partitions being combined, based on a voting mechanism, to generate a new n \times n similarity matrix between the n patterns. The final data partition of the n patterns is obtained by applying a hierarchical agglomerative clustering algorithm on this matrix. We have developed a theoretical framework for the analysis of the proposed clustering combination strategy and its evaluation, based on the concept of mutual information between data partitions. Stability of the results is evaluated using bootstrapping techniques. A detailed discussion of an evidence accumulation-based clustering algorithm, using a split and merge strategy based on the K-means clustering algorithm, is presented. Experimental results of the proposed method on several synthetic and real data sets are compared with other combination strategies, and with individual clustering results produced by well-known clustering algorithms.

Unveiling the biometric potential of finger-based ECG signals

Abstract: The ECG signal has been shown to contain relevant information for human identification. Even though results validate the potential of these signals, data acquisition methods and apparatus explored so far compromise user acceptability, requiring the acquisition of ECG at the chest. In this paper, we propose a finger-based ECG biometric system, that uses signals collected at the fingers, through a minimally intrusive 1-lead ECG setup recurring to Ag/AgCl electrodes without gel as interface with the skin. The collected signal is significantly more noisy than the ECG acquired at the chest, motivating the application of feature extraction and signal processing techniques to the problem. Time domain ECG signal processing is performed, which comprises the usual steps of filtering, peak detection, heartbeat waveform segmentation, and amplitude normalization, plus an additional step of time normalization. Through a simple minimum distance criterion between the test patterns and the enrollment database, results have revealed this to be a promising technique for biometric applications.

Data clustering using evidence accumulation

Abstract: We explore the idea of evidence accumulation for combining the results of multiple clusterings. Initially, n d-dimensional data is decomposed into a large number of compact clusters; the K-means algorithm performs this decomposition, with several clusterings obtained by N random initializations of the K-means. Taking the co-occurrences of pairs of patterns in the same cluster as votes for their association, the data partitions are mapped into a co-association matrix of patterns. This n/spl times/n matrix represents a new similarity measure between patterns. The final clusters are obtained by applying a MST-based clustering algorithm on this matrix. Results on both synthetic and real data show the ability of the method to identify arbitrary shaped clusters in multidimensional data.

Finding Consistent Clusters in Data Partitions

Abstract: Given an arbitrary data set, to which no particular parametrical, statistical or geometrical structure can be assumed, different clustering algorithms will in general produce different data partitions. In fact, several partitions can also be obtained by using a single clustering algorithm due to dependencies on initialization or the selection of the value of some design parameter. This paper addresses the problem of finding consistent clusters in data partitions, proposing the analysis of the most common associations performed in a majority voting scheme. Combination of clustering results are performed by transforming data partitions into a co-association sample matrix, which maps coherent associations. This matrix is then used to extract the underlying consistent clusters. The proposed methodology is evaluated in the context of k-means clustering, a new clustering algorithm - voting-k-means, being presented. Examples, using both simulated and real data, show how this majority voting combination scheme simultaneously handles the problems of selecting the number of clusters, and dependency on initialization. Furthermore, resulting clusters are not constrained to be hyperspherically shaped.

A behavioral biometric system based on human-computer interaction

Abstract: In this paper we describe a new behavioural biometric technique based on human computer interaction. We developed a system that captures the user interaction via a pointing device, and uses this behavioural information to verify the identity of an individual. Using statistical pattern recognition techniques, we developed a sequential classifier that processes user interaction, according to which the user identity is considered genuine if a predefined accuracy level is achieved, and the user is classified as an impostor otherwise. Two statistical models for the features were tested, namely Parzen density estimation and a unimodal distribution. The system was tested with different numbers of users in order to evaluate the scalability of the proposal. Experimental results show that the normal user interaction with the computer via a pointing device entails behavioural information with discriminating power, that can be explored for identity authentication.

Data clustering: a review

Abstract: Clustering is the unsupervised classification of patterns (observations, data items, or feature vectors) into groups (clusters). The clustering problem has been addressed in many contexts and by researchers in many disciplines; this reflects its broad appeal and usefulness as one of the steps in exploratory data analysis. However, clustering is a difficult problem combinatorially, and differences in assumptions and contexts in different communities has made the transfer of useful generic concepts and methodologies slow to occur. This paper presents an overview of pattern clustering methods from a statistical pattern recognition perspective, with a goal of providing useful advice and references to fundamental concepts accessible to the broad community of clustering practitioners. We present a taxonomy of clustering techniques, and identify cross-cutting themes and recent advances. We also describe some important applications of clustering algorithms such as image segmentation, object recognition, and information retrieval.

Phd by thesis

Abstract: Deposits of clastic carbonate-dominated (calciclastic) sedimentary slope systems in the rock record have been identified mostly as linearly-consistent carbonate apron deposits, even though most ancient clastic carbonate slope deposits fit the submarine fan systems better. Calciclastic submarine fans are consequently rarely described and are poorly understood. Subsequently, very little is known especially in mud-dominated calciclastic submarine fan systems. Presented in this study are a sedimentological core and petrographic characterisation of samples from eleven boreholes from the Lower Carboniferous of Bowland Basin (Northwest England) that reveals a >250 m thick calciturbidite complex deposited in a calciclastic submarine fan setting. Seven facies are recognised from core and thin section characterisation and are grouped into three carbonate turbidite sequences. They include: 1) Calciturbidites, comprising mostly of highto low-density, wavy-laminated bioclast-rich facies; 2) low-density densite mudstones which are characterised by planar laminated and unlaminated muddominated facies; and 3) Calcidebrites which are muddy or hyper-concentrated debrisflow deposits occurring as poorly-sorted, chaotic, mud-supported floatstones. These

Data clustering: 50 years beyond K-means

Abstract: Organizing data into sensible groupings is one of the most fundamental modes of understanding and learning. As an example, a common scheme of scientific classification puts organisms into a system of ranked taxa: domain, kingdom, phylum, class, etc. Cluster analysis is the formal study of methods and algorithms for grouping, or clustering, objects according to measured or perceived intrinsic characteristics or similarity. Cluster analysis does not use category labels that tag objects with prior identifiers, i.e., class labels. The absence of category information distinguishes data clustering (unsupervised learning) from classification or discriminant analysis (supervised learning). The aim of clustering is to find structure in data and is therefore exploratory in nature. Clustering has a long and rich history in a variety of scientific fields. One of the most popular and simple clustering algorithms, K-means, was first published in 1955. In spite of the fact that K-means was proposed over 50 years ago and thousands of clustering algorithms have been published since then, K-means is still widely used. This speaks to the difficulty in designing a general purpose clustering algorithm and the ill-posed problem of clustering. We provide a brief overview of clustering, summarize well known clustering methods, discuss the major challenges and key issues in designing clustering algorithms, and point out some of the emerging and useful research directions, including semi-supervised clustering, ensemble clustering, simultaneous feature selection during data clustering, and large scale data clustering.

Cluster ensembles --- a knowledge reuse framework for combining multiple partitions

Abstract: This paper introduces the problem of combining multiple partitionings of a set of objects into a single consolidated clustering without accessing the features or algorithms that determined these partitionings. We first identify several application scenarios for the resultant 'knowledge reuse' framework that we call cluster ensembles. The cluster ensemble problem is then formalized as a combinatorial optimization problem in terms of shared mutual information. In addition to a direct maximization approach, we propose three effective and efficient techniques for obtaining high-quality combiners (consensus functions). The first combiner induces a similarity measure from the partitionings and then reclusters the objects. The second combiner is based on hypergraph partitioning. The third one collapses groups of clusters into meta-clusters which then compete for each object to determine the combined clustering. Due to the low computational costs of our techniques, it is quite feasible to use a supra-consensus function that evaluates all three approaches against the objective function and picks the best solution for a given situation. We evaluate the effectiveness of cluster ensembles in three qualitatively different application scenarios: (i) where the original clusters were formed based on non-identical sets of features, (ii) where the original clustering algorithms worked on non-identical sets of objects, and (iii) where a common data-set is used and the main purpose of combining multiple clusterings is to improve the quality and robustness of the solution. Promising results are obtained in all three situations for synthetic as well as real data-sets.