Author
Andrew Siefert
Other affiliations: Syracuse University, University of California
Bio: Andrew Siefert is an academic researcher from University of California, Davis. The author has contributed to research in topics: Trait & Intraspecific competition. The author has an hindex of 17, co-authored 21 publications receiving 3414 citations. Previous affiliations of Andrew Siefert include Syracuse University & University of California.
Papers
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Max Planck Society1, National University of Cordoba2, Centre national de la recherche scientifique3, Macquarie University4, University of Paris-Sud5, University of Western Sydney6, University of Minnesota7, VU University Amsterdam8, University of Arizona9, University of California, Berkeley10, University of Guelph11, Australian National University12, University of Innsbruck13, University of Leeds14, University of Groningen15, Universidade Federal do Rio Grande do Sul16, University of Cape Town17, University of Wollongong18, New Jersey Institute of Technology19, Centro Agronómico Tropical de Investigación y Enseñanza20, Lawrence Berkeley National Laboratory21, University of Alaska Fairbanks22, University of Cambridge23, Kansas State University24, Helmholtz Centre for Environmental Research - UFZ25, Arizona State University26, University of Giessen27, Autonomous University of Barcelona28, University of Maryland, College Park29, Universidad del Tolima30, University of São Paulo31, University of La Réunion32, University of York33, University of Sydney34, Harvard University35, Goethe University Frankfurt36, University of Sheffield37, University of Ulm38, State University of Campinas39, Kenyon College40, Royal Botanic Gardens41, University of Florida42, University of Oldenburg43, University of Nebraska–Lincoln44, Tohoku University45, Northern Arizona University46, University of Wisconsin–Eau Claire47, Naturalis48, James Cook University49, Institut national de la recherche agronomique50, Newcastle University51, University of New South Wales52, Leipzig University53, Columbia University54, Estonian University of Life Sciences55, Polish Academy of Sciences56, Moscow State University57, Kyushu University58, Wageningen University and Research Centre59, Spanish National Research Council60, University of Regensburg61, University of Rennes62, Université du Québec à Trois-Rivières63, Potsdam Institute for Climate Impact Research64, Technical University of Denmark65, University of California, Los Angeles66, Hokkaido University67, Université de Sherbrooke68, Syracuse University69, Empresa Brasileira de Pesquisa Agropecuária70, University of Aberdeen71, Michigan State University72, Oak Ridge National Laboratory73, University of Leicester74, Utah State University75, Smithsonian Institution76, University of Missouri77
TL;DR: TRY as discussed by the authors is a global database of plant traits, including morphological, anatomical, physiological, biochemical and phenological characteristics of plants and their organs, which can be used for a wide range of research from evolutionary biology, community and functional ecology to biogeography.
Abstract: Plant traits – the morphological, anatomical, physiological, biochemical and phenological characteristics of plants and their organs – determine how primary producers respond to environmental factors, affect other trophic levels, influence ecosystem processes and services and provide a link from species richness to ecosystem functional diversity. Trait data thus represent the raw material for a wide range of research from evolutionary biology, community and functional ecology to biogeography. Here we present the global database initiative named TRY, which has united a wide range of the plant trait research community worldwide and gained an unprecedented buy-in of trait data: so far 93 trait databases have been contributed. The data repository currently contains almost three million trait entries for 69 000 out of the world's 300 000 plant species, with a focus on 52 groups of traits characterizing the vegetative and regeneration stages of the plant life cycle, including growth, dispersal, establishment and persistence. A first data analysis shows that most plant traits are approximately log-normally distributed, with widely differing ranges of variation across traits. Most trait variation is between species (interspecific), but significant intraspecific variation is also documented, up to 40% of the overall variation. Plant functional types (PFTs), as commonly used in vegetation models, capture a substantial fraction of the observed variation – but for several traits most variation occurs within PFTs, up to 75% of the overall variation. In the context of vegetation models these traits would better be represented by state variables rather than fixed parameter values. The improved availability of plant trait data in the unified global database is expected to support a paradigm shift from species to trait-based ecology, offer new opportunities for synthetic plant trait research and enable a more realistic and empirically grounded representation of terrestrial vegetation in Earth system models.
2,017 citations
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University of Grenoble1, Centre national de la recherche scientifique2, Austral University of Chile3, Queen's University4, Universidade Federal de Goiás5, Universidade Federal do Rio Grande do Sul6, Coordenadoria de Aperfeiçoamento de Pessoal de Nível Superior7, State University of Campinas8, Academy of Sciences of the Czech Republic9, Sewanee: The University of the South10, Federal University of Rio Grande do Norte11, Swedish University of Agricultural Sciences12, University of Montpellier13, Institut national de la recherche agronomique14, Tohoku University15, United Nations University16, University of Florida17, Université du Québec à Montréal18, University of Maryland, College Park19, Université de Sherbrooke20, Landcare Research21, Spanish National Research Council22, Lund University23, University of Tokyo24, Algoma University25, Umeå University26, Natural History Museum27
TL;DR: This paper conducted a meta-analysis of the relative extent of ITV within and among plant communities worldwide, using a data set encompassing 629 communities (plots) and 36 functional traits.
Abstract: Recent studies have shown that accounting for intraspecific trait variation (ITV) may better address major questions in community ecology. However, a general picture of the relative extent of ITV compared to interspecific trait variation in plant communities is still missing. Here, we conducted a meta-analysis of the relative extent of ITV within and among plant communities worldwide, using a data set encompassing 629 communities (plots) and 36 functional traits. Overall, ITV accounted for 25% of the total trait variation within communities and 32% of the total trait variation among communities on average. The relative extent of ITV tended to be greater for whole-plant (e.g. plant height) vs. organ-level traits and for leaf chemical (e.g. leaf N and P concentration) vs. leaf morphological (e.g. leaf area and thickness) traits. The relative amount of ITV decreased with increasing species richness and spatial extent, but did not vary with plant growth form or climate. These results highlight global patterns in the relative importance of ITV in plant communities, providing practical guidelines for when researchers should include ITV in trait-based community and ecosystem studies.
653 citations
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University of New South Wales1, University of California, Los Angeles2, Max Planck Society3, Queen's University4, University of Guelph5, University of Innsbruck6, University of Arizona7, VU University Amsterdam8, National University of Cordoba9, Royal Botanic Gardens10, Centre national de la recherche scientifique11, Austral University of Chile12, ETH Zurich13, Goethe University Frankfurt14, University of Oldenburg15, Tohoku University16, Macquarie University17, University of Life Sciences in Lublin18, Moscow State University19, Kyoto University20, Spanish National Research Council21, Universidade Federal do Rio Grande do Sul22, Hokkaido University23, Syracuse University24, Empresa Brasileira de Pesquisa Agropecuária25, University of Amsterdam26, University of Aberdeen27, Michigan State University28, University of Wisconsin–Eau Claire29, University of Tartu30
TL;DR: This work quantified the strength of the relationships between temperature and precipitation and 21 plant traits from 447,961 species-site combinations worldwide and used meta-analysis to provide an overall answer to the question.
Abstract: Question: Are plant traits more closely correlated with mean annual temperature, or with mean annual precipitation? Location: Global. Methods: We quantified the strength of the relationships between temperature and precipitation and 21 plant traits from 447,961 species-site combinations worldwide. We used meta-analysis to provide an overall answer to our question.
327 citations
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University of Milan1, Universidade Federal de Minas Gerais2, University of Insubria3, Max Planck Society4, National University of Cordoba5, University of Oldenburg6, Université de Sherbrooke7, Smithsonian Tropical Research Institute8, Leiden University9, Moscow State University10, University of Wisconsin–Eau Claire11, Federal University of Pernambuco12, VU University Amsterdam13, University of Sheffield14, University of Exeter15, College of African Wildlife Management16, University of Western Sydney17, University of Minnesota18, University of California, Davis19, University of Alaska Fairbanks20, University of New South Wales21, Chinese Academy of Sciences22, Stanford University23, Centre national de la recherche scientifique24, Gembloux Agro-Bio Tech25, Spanish National Research Council26
TL;DR: The CSR strategies of vascular plants can be compared quantitatively within and between biomes at the global scale and the strategy–environment relationships it elucidates will help to predict which kinds of species may assemble in response to changes in biogeochemical cycles, climate and land use.
Abstract: Summary
Competitor, stress-tolerator, ruderal (CSR) theory is a prominent plant functional strategy scheme previously applied to local floras. Globally, the wide geographic and phylogenetic coverage of available values of leaf area (LA), leaf dry matter content (LDMC) and specific leaf area (SLA) (representing, respectively, interspecific variation in plant size and conservative vs. acquisitive resource economics) promises the general application of CSR strategies across biomes, including the tropical forests hosting a large proportion of Earth's diversity.
We used trait variation for 3068 tracheophytes (representing 198 families, six continents and 14 biomes) to create a globally calibrated CSR strategy calculator tool and investigate strategy–environment relationships across biomes world-wide.
Due to disparity in trait availability globally, co-inertia analysis was used to check correspondence between a ‘wide geographic coverage, few traits’ data set and a ‘restricted coverage, many traits’ subset of 371 species for which 14 whole-plant, flowering, seed and leaf traits (including leaf nitrogen content) were available. CSR strategy/environment relationships within biomes were investigated using fourth-corner and RLQ analyses to determine strategy/climate specializations.
Strong, significant concordance (RV = 0·597; P < 0·0001) was evident between the 14 trait multivariate space and when only LA, LDMC and SLA were used.
Biomes such as tropical moist broadleaf forests exhibited strategy convergence (i.e. clustered around a CS/CSR median; C:S:R = 43:42:15%), with CS-selection associated with warm, stable situations (lesser temperature seasonality), with greater annual precipitation and potential evapotranspiration. Other biomes were characterized by strategy divergence: for example, deserts varied between xeromorphic perennials such as Larrea divaricata, classified as S-selected (C:S:R = 1:99:0%) and broadly R-selected annual herbs (e.g. Claytonia perfoliata; R/CR-selected; C:S:R = 21:0:79%). Strategy convergence was evident for several growth habits (e.g. trees) but not others (forbs).
The CSR strategies of vascular plants can now be compared quantitatively within and between biomes at the global scale. Through known linkages between underlying leaf traits and growth rates, herbivory and decomposition rates, this method and the strategy–environment relationships it elucidates will help to predict which kinds of species may assemble in response to changes in biogeochemical cycles, climate and land use.
302 citations
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TL;DR: The observed patterns of functional beta diversity support a niche-based model of community assembly, driven by the deterministic filtering of species across environmental gradients based on their functional traits.
Abstract: Aim
Determining the relative influence of niche-based and neutral processes in driving the spatial turnover of community composition is a central challenge in community ecology. Spatial patterns of functional turnover, or functional beta diversity, may capture important signals of niche-based assembly processes, but these patterns have not been quantified for communities across broad geographic and environmental gradients. Here, we analyse continental-scale patterns of species and functional beta diversity in relation to space and the environment to assess the relative importance of niche-based and neutral community assembly mechanisms.
Location
Eastern North America.
Methods
We use a continental-scale forest plot dataset and functional trait data to quantify spatial patterns of species and functional beta diversity. We use redundancy analysis-based variance partitioning to evaluate the influence of space, soil and climate on beta-diversity metrics. We use a null model approach to test for non-random functional beta diversity given the observed patterns of species turnover across spatial scales.
Results
Species and functional beta diversity increased with increasing geographic distance (i.e. distance decay of community similarity). Results of variance partitioning analysis show that species and functional beta diversity were spatially structured and significantly related to environmental, particularly climatic, variation. Results of null model analysis show that functional beta diversity was lower than expected based on species turnover at fine scales ( 1800 km).
Main conclusions
The observed patterns of functional beta diversity support a niche-based model of community assembly, driven by the deterministic filtering of species across environmental gradients based on their functional traits.
127 citations
Cited by
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TL;DR: For the next few weeks the course is going to be exploring a field that’s actually older than classical population genetics, although the approach it’ll be taking to it involves the use of population genetic machinery.
Abstract: So far in this course we have dealt entirely with the evolution of characters that are controlled by simple Mendelian inheritance at a single locus. There are notes on the course website about gametic disequilibrium and how allele frequencies change at two loci simultaneously, but we didn’t discuss them. In every example we’ve considered we’ve imagined that we could understand something about evolution by examining the evolution of a single gene. That’s the domain of classical population genetics. For the next few weeks we’re going to be exploring a field that’s actually older than classical population genetics, although the approach we’ll be taking to it involves the use of population genetic machinery. If you know a little about the history of evolutionary biology, you may know that after the rediscovery of Mendel’s work in 1900 there was a heated debate between the “biometricians” (e.g., Galton and Pearson) and the “Mendelians” (e.g., de Vries, Correns, Bateson, and Morgan). Biometricians asserted that the really important variation in evolution didn’t follow Mendelian rules. Height, weight, skin color, and similar traits seemed to
9,847 citations
01 Jan 2016
TL;DR: The modern applied statistics with s is universally compatible with any devices to read, and is available in the digital library an online access to it is set as public so you can download it instantly.
Abstract: Thank you very much for downloading modern applied statistics with s. As you may know, people have search hundreds times for their favorite readings like this modern applied statistics with s, but end up in harmful downloads. Rather than reading a good book with a cup of coffee in the afternoon, instead they cope with some harmful virus inside their laptop. modern applied statistics with s is available in our digital library an online access to it is set as public so you can download it instantly. Our digital library saves in multiple countries, allowing you to get the most less latency time to download any of our books like this one. Kindly say, the modern applied statistics with s is universally compatible with any devices to read.
5,249 citations
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University of Michigan1, College of William & Mary2, McGill University3, Western Washington University4, Arizona State University5, Imperial College London6, University of Minnesota7, Swedish University of Agricultural Sciences8, Stanford University9, Centre national de la recherche scientifique10, United States Geological Survey11, University of British Columbia12, Columbia University13
TL;DR: It is argued that human actions are dismantling the Earth’s ecosystems, eliminating genes, species and biological traits at an alarming rate, and the question of how such loss of biological diversity will alter the functioning of ecosystems and their ability to provide society with the goods and services needed to prosper is asked.
Abstract: The most unique feature of Earth is the existence of life, and the most extraordinary feature of life is its diversity. Approximately 9 million types of plants, animals, protists and fungi inhabit the Earth. So, too, do 7 billion people. Two decades ago, at the first Earth Summit, the vast majority of the world's nations declared that human actions were dismantling the Earth's ecosystems, eliminating genes, species and biological traits at an alarming rate. This observation led to the question of how such loss of biological diversity will alter the functioning of ecosystems and their ability to provide society with the goods and services needed to prosper.
5,244 citations
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National University of Cordoba1, SupAgro2, Joseph Fourier University3, University of Alaska Fairbanks4, VU University Amsterdam5, Kansas State University6, University of Western Australia7, University of Minnesota8, Wageningen University and Research Centre9, Macquarie University10, Stanford University11, Spanish National Research Council12, ETH Zurich13, University of Sheffield14, Utrecht University15, University of California, Los Angeles16, University of Arizona17, University of Regensburg18, Princeton University19, Centro Agronómico Tropical de Investigación y Enseñanza20
TL;DR: This new handbook has a better balance between whole-plant traits, leaf traits, root and stem traits and regenerative traits, and puts particular emphasis on traits important for predicting species’ effects on key ecosystem properties.
Abstract: Plant functional traits are the features (morphological, physiological, phenological) that represent ecological strategies and determine how plants respond to environmental factors, affect other trophic levels and influence ecosystem properties. Variation in plant functional traits, and trait syndromes, has proven useful for tackling many important ecological questions at a range of scales, giving rise to a demand for standardised ways to measure ecologically meaningful plant traits. This line of research has been among the most fruitful avenues for understanding ecological and evolutionary patterns and processes. It also has the potential both to build a predictive set of local, regional and global relationships between plants and environment and to quantify a wide range of natural and human-driven processes, including changes in biodiversity, the impacts of species invasions, alterations in biogeochemical processes and vegetation–atmosphere interactions. The importance of these topics dictates the urgent need for more and better data, and increases the value of standardised protocols for quantifying trait variation of different species, in particular for traits with power to predict plant- and ecosystem-level processes, and for traits that can be measured relatively easily. Updated and expanded from the widely used previous version, this handbook retains the focus on clearly presented, widely applicable, step-by-step recipes, with a minimum of text on theory, and not only includes updated methods for the traits previously covered, but also introduces many new protocols for further traits. This new handbook has a better balance between whole-plant traits, leaf traits, root and stem traits and regenerative traits, and puts particular emphasis on traits important for predicting species’ effects on key ecosystem properties. We hope this new handbook becomes a standard companion in local and global efforts to learn about the responses and impacts of different plant species with respect to environmental changes in the present, past and future.
2,744 citations