Annalisa Berta

Bio: Annalisa Berta is an academic researcher from San Diego State University. The author has contributed to research in topics: Baleen & Monophyly. The author has an hindex of 32, co-authored 98 publications receiving 3778 citations.

Marine Mammals: Evolutionary Biology

Abstract: PART I: EVOLUTIONARY HISTORY Systematics and Classification Pinniped Evolution and Systematics Cetacean Evolution and Systematics Sirenians and Other Marine Mammals: Evolution and Systematics Evolutionary Biogeography PART II: EVOLUTIONARY BIOLOGY, ECOLOGY, AND BEHAVIOR Integumentary and Sensory Systems Musculoskeletal System and Locomotion Energetics Respiration and Diving Physiology Sound Production for Communication, Echolocation, and Prey Capture Diet, Foraging Structures, and Strategies Reproductive Structures, Strategies, and Patterns Population Structure and Population Dynamics Conservation and Protection References Appendix: Classification of Marine Mammals Glossary Index

Morphological and Molecular Evidence for a Stepwise Evolutionary Transition from Teeth to Baleen in Mysticete Whales

Abstract: The origin of baleen in mysticete whales represents a major transition in the phylogenetic history of Cetacea. This key specialization, a keratinous sieve that enables filter-feeding, permitted exploitation of a new ecological niche and heralded the evolution of modern baleen-bearing whales, the largest animals on Earth. To date, all formally described mysticete fossils conform to two types: toothed species from Oligocene-age rocks ( approximately 24 to 34 million years old) and toothless species that presumably utilized baleen to feed (Recent to approximately 30 million years old). Here, we show that several Oligocene toothed mysticetes have nutrient foramina and associated sulci on the lateral portions of their palates, homologous structures in extant mysticetes house vessels that nourish baleen. The simultaneous occurrence of teeth and nutrient foramina implies that both teeth and baleen were present in these early mysticetes. Phylogenetic analyses of a supermatrix that includes extinct taxa and new data for 11 nuclear genes consistently resolve relationships at the base of Mysticeti. The combined data set of 27,340 characters supports a stepwise transition from a toothed ancestor, to a mosaic intermediate with both teeth and baleen, to modern baleen whales that lack an adult dentition but retain developmental and genetic evidence of their ancestral toothed heritage. Comparative sequence data for ENAM (enamelin) and AMBN (ameloblastin) indicate that enamel-specific loci are present in Mysticeti but have degraded to pseudogenes in this group. The dramatic transformation in mysticete feeding anatomy documents an apparently rare, stepwise mode of evolution in which a composite phenotype bridged the gap between primitive and derived morphologies; a combination of fossil and molecular evidence provides a multifaceted record of this macroevolutionary pattern.

Chapter 3: Pinnipedimorph Evolutionary Biogeography

Abstract: Abstract Previous hypotheses for the origin and diversification of pinnipeds have followed a narrative approach based mostly on dispersalist (i.e., center of origin) explanations. Using an analytical approach, we present a testable hypothesis to explain the evolutionary biogeography of pinnipedimorphs (fur seals, sea lions, walruses, seals, and their fossil relatives) based on both dispersal and vicariant events in the context of a species-level phylogenetic framework. This integrated hypothesis considers many lines of evidence, including physical and ecologic factors controlling modern pinniped distributions, past geologic events related to opening and closing of seaways, paleoceanographic models, the improving pinniped fossil record, and pinniped phylogenetic analyses based on both morphologic and molecular data sets. Oceanic biogeographic regions and faunal provinces are defined and oceanic circulation patterns discussed with reference to the distribution of extant and fossil species. Paleobiogeographic hypotheses for each of the major pinniped lineages are presented using area cladograms and paleogeographic maps showing oceanographic and tectonic changes during successive intervals of the Cenozoic. Our biogeographic hypothesis supports an eastern North Pacific origin for pinnipedimorphs during the late Oligocene coincident with initiation of glaciation in Antarctica. During the early Miocene, pinnipedimorphs remained restricted to the eastern North Pacific, where they began to diversify. Otariids (fur seals and sea lions) are first known from the late Miocene in the North Pacific, where they remained restricted until the late Pliocene. A transequatorial dispersal into the western South Pacific at this time preceded the rapid diversification of this group that occurred during the Pleistocene in the Southern Ocean. Odobenids (walruses) evolved in the North Pacific during the late early Miocene and underwent dramatic diversification in the late Miocene with later members of the odobenine lineage dispersing into the North Atlantic, most likely via an Arctic route. Extinct archaic phocoids, the desmatophocids, known only from the early to late Miocene, were confined to the eastern and western North Pacific. Phocids, although postulated here to have a North Pacific origin, are first known as fossils from the middle Miocene in the eastern and western North Atlantic region, as well as the Paratethys. Both monachine and phocine seals are distinct lineages beginning in the middle Miocene in the eastern and western provinces of the North Atlantic. During the late Miocene, phocids underwent a dramatic diversification. The early biogeographic history of phocine seals is centered in the Arctic and North Atlantic. Subsequent dispersal of phocines into the Paratethys and Pacific occurred during the Pleistocene. In contrast, monachine seals have a southern hemisphere center of diversity, especially the lobodontines of the Southern Ocean. Southern dispersal of this clade most likely occurred through the Neogene Central American Seaway prior to its closure in the mid-Pliocene. The pagophilic nature of extant phocine and lobodontine seals is largely a function of Pleistocene glacioeustatic events.

The Theory of Island Biogeography

Abstract: Preface to the Princeton Landmarks in Biology Edition vii Preface xi Symbols Used xiii 1. The Importance of Islands 3 2. Area and Number of Speicies 8 3. Further Explanations of the Area-Diversity Pattern 19 4. The Strategy of Colonization 68 5. Invasibility and the Variable Niche 94 6. Stepping Stones and Biotic Exchange 123 7. Evolutionary Changes Following Colonization 145 8. Prospect 181 Glossary 185 References 193 Index 201

The biodiversity of species and their rates of extinction, distribution, and protection

Abstract: Background A principal function of the Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services (IPBES) is to “perform regular and timely assessments of knowledge on biodiversity.” In December 2013, its second plenary session approved a program to begin a global assessment in 2015. The Convention on Biological Diversity (CBD) and five other biodiversity-related conventions have adopted IPBES as their science-policy interface, so these assessments will be important in evaluating progress toward the CBD’s Aichi Targets of the Strategic Plan for Biodiversity 2011–2020. As a contribution toward such assessment, we review the biodiversity of eukaryote species and their extinction rates, distributions, and protection. We document what we know, how it likely differs from what we do not, and how these differences affect biodiversity statistics. Interestingly, several targets explicitly mention “known species”—a strong, if implicit, statement of incomplete knowledge. We start by asking how many species are known and how many remain undescribed. We then consider by how much human actions inflate extinction rates. Much depends on where species are, because different biomes contain different numbers of species of different susceptibilities. Biomes also suffer different levels of damage and have unequal levels of protection. How extinction rates will change depends on how and where threats expand and whether greater protection counters them. Different visualizations of species biodiversity. ( A ) The distributions of 9927 bird species. ( B ) The 4964 species with smaller than the median geographical range size. ( C ) The 1308 species assessed as threatened with a high risk of extinction by BirdLife International for the Red List of Threatened Species of the International Union for Conservation of Nature. ( D ) The 1080 threatened species with less than the median range size. (D) provides a strong geographical focus on where local conservation actions can have the greatest global impact. Additional biodiversity maps are available at www.biodiversitymapping.org. Advances Recent studies have clarified where the most vulnerable species live, where and how humanity changes the planet, and how this drives extinctions. These data are increasingly accessible, bringing greater transparency to science and governance. Taxonomic catalogs of plants, terrestrial vertebrates, freshwater fish, and some marine taxa are sufficient to assess their status and the limitations of our knowledge. Most species are undescribed, however. The species we know best have large geographical ranges and are often common within them. Most known species have small ranges, however, and such species are typically newer discoveries. The numbers of known species with very small ranges are increasing quickly, even in well-known taxa. They are geographically concentrated and are disproportionately likely to be threatened or already extinct. We expect unknown species to share these characteristics. Current rates of extinction are about 1000 times the background rate of extinction. These are higher than previously estimated and likely still underestimated. Future rates will depend on many factors and are poised to increase. Finally, although there has been rapid progress in developing protected areas, such efforts are not ecologically representative, nor do they optimally protect biodiversity. Outlook Progress on assessing biodiversity will emerge from continued expansion of the many recently created online databases, combining them with new global data sources on changing land and ocean use and with increasingly crowdsourced data on species’ distributions. Examples of practical conservation that follow from using combined data in Colombia and Brazil can be found at www.savingspecies.org and www.youtube.com/watch?v=R3zjeJW2NVk.

A new species

Abstract: We redescribe the only previously known species of Myrsidea from bulbuls, M. pycnonoti Eichler. Sixteen new species are described; they and their type hosts are: M. phillipsi ex Pycnonotus goiavier goiavier (Scopoli), M. gieferi ex P. goiavier suluensis Mearns, M. kulpai ex P. flavescens Blyth, M. finlaysoni ex P. finlaysoni Strickland, M. kathleenae ex P. cafer (L.), M. warwicki ex Ixos philippinus (J. R. Forster), M. mcclurei ex Microscelis amaurotis (Temminck), M. zeylanici ex P. zeylanicus (Gmelin), M. plumosi ex P. plumosus Blyth, M. eutiloti ex P. eutilotus (Jardine and Selby), M. adamsae ex P. urostictus (Salvadori), M. ochracei ex Criniger ochraceus F. Moore, M. borbonici ex Hypsipetes borbonicus (J. R. Forster), M. johnsoni ex P. atriceps (Temminck), M. palmai ex C. ochraceus, and M. claytoni ex P. eutilotus. A key is provided for the identification of these 17 species.

Eukaryotic plankton diversity in the sunlit ocean

Abstract: Marine plankton support global biological and geochemical processes. Surveys of their biodiversity have hitherto been geographically restricted and have not accounted for the full range of plankton size. We assessed eukaryotic diversity from 334 size-fractionated photic-zone plankton communities collected across tropical and temperate oceans during the circumglobal Tara Oceans expedition. We analyzed 18S ribosomal DNA sequences across the intermediate plankton-size spectrum from the smallest unicellular eukaryotes (protists, >0.8 micrometers) to small animals of a few millimeters. Eukaryotic ribosomal diversity saturated at ~150,000 operational taxonomic units, about one-third of which could not be assigned to known eukaryotic groups. Diversity emerged at all taxonomic levels, both within the groups comprising the ~11,200 cataloged morphospecies of eukaryotic plankton and among twice as many other deep-branching lineages of unappreciated importance in plankton ecology studies. Most eukaryotic plankton biodiversity belonged to heterotrophic protistan groups, particularly those known to be parasites or symbiotic hosts.

How many species of algae are there

Abstract: Algae have been estimated to include anything from 30,000 to more than 1 million species An attempt is made here to arrive at a more accurate estimate using species numbers in phyla and classes included in the on-line taxonomic database AlgaeBase (http://wwwalgaebaseorg) Despite uncertainties regarding what organisms should be included as algae and what a species is in the context of the various algal phyla and classes, a conservative approach results in an estimate of 72,500 algal species, names for 44,000 of which have probably been published, and 33,248 names have been processed by AlgaeBase to date (June 2012) Some published estimates of diatom numbers are of over 200,000 species, which would result in four to five diatom species for every other algal species Concern is expressed at the decline and potential extinction of taxonomists worldwide capable of improving and completing the necessary systematic studies