Author
Asger Halkier
Other affiliations: University of Trieste, Utrecht University
Bio: Asger Halkier is an academic researcher from Aarhus University. The author has contributed to research in topics: Coupled cluster & Quadrupole. The author has an hindex of 24, co-authored 41 publications receiving 6246 citations. Previous affiliations of Asger Halkier include University of Trieste & Utrecht University.
Topics: Coupled cluster, Quadrupole, Electric field gradient, Dipole, Ab initio
Papers
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TL;DR: In this article, the correlation-consistent polarized valence and core-valence basis sets up to sextuple zeta quality are employed to compute the correlation energies of Ne, N2, and H2O at fixed experimental geometries at the levels of second-order perturbation theory (MP2) and coupled cluster theory with singles and doubles excitations (CCSD) with a perturbative triples correction (T)).
1,961 citations
Vilnius University1, University of Ferrara2, Aarhus University3, University of Oslo4, Royal Institute of Technology5, Electromagnetic Geoservices6, University of Trieste7, Norwegian Computing Center8, University of Southern Denmark9, University of Santiago de Compostela10, Danske Bank11, Ruhr University Bochum12, Norwegian Meteorological Institute13, Norwegian Defence Research Establishment14, University of Auckland15, Norwegian University of Science and Technology16, Information Technology University17, Technical University of Ostrava18, Linköping University19, Karlsruhe Institute of Technology20, ETH Zurich21, Australian National University22, University of Modena and Reggio Emilia23, Cisco Systems, Inc.24, University of Buenos Aires25, University of Copenhagen26, University of Erlangen-Nuremberg27, Kazimierz Wielki University in Bydgoszcz28, National Scientific and Technical Research Council29, University of Valencia30, Paul Sabatier University31, University of Melbourne32, University of Nottingham33, University of Bristol34, CLC bio35, Princeton University36, La Trobe University37, Clemson University38
TL;DR: Dalton is a powerful general‐purpose program system for the study of molecular electronic structure at the Hartree–Fock, Kohn–Sham, multiconfigurational self‐consistent‐field, Møller–Plesset, configuration‐interaction, and coupled‐cluster levels of theory.
Abstract: Dalton is a powerful general-purpose program system for the study of molecular electronic structure at the Hartree-Fock, Kohn-Sham, multiconfigurational self-consistent-field, MOller-Plesset, confi ...
1,212 citations
TL;DR: In this paper, the Hartree-Fock total energy and binding energy were investigated for the correlation-consistent cc-pVXZ basis sets, and the basis set errors for the total energy (Δ E ) fit an exponential form better than a power form.
601 citations
TL;DR: In this article, the Hartree-Fock and correlation contributions to the interaction energy of the hydrogen-bonded complexes were computed in conventional calculations employing the aug-cc-pVXZ series of basis sets at the levels of second-order perturbation theory, and coupled-cluster theory with single and double excitations augmented by a perturbative triples correction.
Abstract: The Hartree-Fock and correlation contributions to the interaction energy of the hydrogen-bonded complexes (HF)2, (HCl)2, H2OHF, HCNHF, and (H2O)2 are computed in conventional calculations employing the aug-cc-pVXZ series of basis sets at the levels of Hartree-Fock theory, second-order perturbation theory, and coupled-cluster theory with single and double excitations augmented by a perturbative triples correction. The basis set convergence of the interaction energy is examined by comparison with results obtained with an explicitly correlated wave function model. The counterpoise-corrected and uncorrected Hartree-Fock interaction energies both converge very unsystematically. The convergence of the uncorrected correlation contribution is also very unsystematic because the basis set superposition error and the error from the incomplete description of the electronic Coulomb cusp both are present. Once the former has been effectively removed by the counterpoise correction, the cusp dominates and the convergence...
347 citations
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TL;DR: The results indicate that the revised CHARMM 36 parameters represent an improved model for the modeling and simulation studies of proteins, including studies of protein folding, assembly and functionally relevant conformational changes.
Abstract: While the quality of the current CHARMM22/CMAP additive force field for proteins has been demonstrated in a large number of applications, limitations in the model with respect to the equilibrium between the sampling of helical and extended conformations in folding simulations have been noted. To overcome this, as well as make other improvements in the model, we present a combination of refinements that should result in enhanced accuracy in simulations of proteins. The common (non Gly, Pro) backbone CMAP potential has been refined against experimental solution NMR data for weakly structured peptides, resulting in a rebalancing of the energies of the α-helix and extended regions of the Ramachandran map, correcting the α-helical bias of CHARMM22/CMAP. The Gly and Pro CMAPs have been refitted to more accurate quantum-mechanical energy surfaces. Side-chain torsion parameters have been optimized by fitting to backbone-dependent quantum-mechanical energy surfaces, followed by additional empirical optimization targeting NMR scalar couplings for unfolded proteins. A comprehensive validation of the revised force field was then performed against data not used to guide parametrization: (i) comparison of simulations of eight proteins in their crystal environments with crystal structures; (ii) comparison with backbone scalar couplings for weakly structured peptides; (iii) comparison with NMR residual dipolar couplings and scalar couplings for both backbone and side-chains in folded proteins; (iv) equilibrium folding of mini-proteins. The results indicate that the revised CHARMM 36 parameters represent an improved model for the modeling and simulation studies of proteins, including studies of protein folding, assembly and functionally relevant conformational changes.
3,421 citations
TL;DR: In this article, the essential aspects of coupled-cluster theory are explained and illustrated with informative numerical results, showing that the theory offers the most accurate results among the practical ab initio electronic-structure theories applicable to moderate-sized molecules.
Abstract: Today, coupled-cluster theory offers the most accurate results among the practical ab initio electronic-structure theories applicable to moderate-sized molecules. Though it was originally proposed for problems in physics, it has seen its greatest development in chemistry, enabling an extensive range of applications to molecular structure, excited states, properties, and all kinds of spectroscopy. In this review, the essential aspects of the theory are explained and illustrated with informative numerical results.
2,667 citations
TL;DR: The parmbsc0 force field as mentioned in this paper is a refinement of the AMBER parm99 force field, where emphasis has been made on the correct representation of the a/g concerted rotation in nucleic acids (NAs).
1,982 citations
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TL;DR: The Gaussian-4 theory (G4 theory) for the calculation of energies of compounds containing first- (Li-F), second- (Na-Cl), and third-row main group (K, Ca, and Ga-Kr) atoms is presented and a significant improvement is found for 79 nonhydrogen systems.
Abstract: The Gaussian-4 theory (G4 theory) for the calculation of energies of compounds containing first- (Li–F), second- (Na–Cl), and third-row main group (K, Ca, and Ga–Kr) atoms is presented. This theoretical procedure is the fourth in the Gaussian-n series of quantum chemical methods based on a sequence of single point energy calculations. The G4 theory modifies the Gaussian-3 (G3) theory in five ways. First, an extrapolation procedure is used to obtain the Hartree-Fock limit for inclusion in the total energy calculation. Second, the d-polarization sets are increased to 3d on the first-row atoms and to 4d on the second-row atoms, with reoptimization of the exponents for the latter. Third, the QCISD(T) method is replaced by the CCSD(T) method for the highest level of correlation treatment. Fourth, optimized geometries and zero-point energies are obtained with the B3LYP density functional. Fifth, two new higher level corrections are added to account for deficiencies in the energy calculations. The new method is ...
1,733 citations
TL;DR: MP2 and CCSD(T) complete basis set (CBS) limit interaction energies and geometries for more than 100 DNA base pairs, amino acid pairs and model complexes are for the first time presented together.
Abstract: MP2 and CCSD(T) complete basis set (CBS) limit interaction energies and geometries for more than 100 DNA base pairs, amino acid pairs and model complexes are for the first time presented together. Extrapolation to the CBS limit is done by using two-point extrapolation methods and different basis sets (aug-cc-pVDZ – aug-cc-pVTZ, aug-cc-pVTZ – aug-cc-pVQZ, cc-pVTZ – cc-pVQZ) are utilized. The CCSD(T) correction term, determined as a difference between CCSD(T) and MP2 interaction energies, is evaluated with smaller basis sets (6-31G** and cc-pVDZ). Two sets of complex geometries were used, optimized or experimental ones. The JSCH-2005 benchmark set, which is now available to the chemical community, can be used for testing lower-level computational methods. For the first screening the smaller training set (S22) containing 22 model complexes can be recommended. In this case larger basis sets were used for extrapolation to the CBS limit and also CCSD(T) and counterpoise-corrected MP2 optimized geometries were sometimes adopted.
1,672 citations