B. Davis

Bio: B. Davis is an academic researcher from University of Guelph. The author has contributed to research in topics: Sulfate-reducing bacteria & Tailings. The author has an hindex of 3, co-authored 4 publications receiving 513 citations.

Biogeochemical Phenomena Induced by Bacteria Within Sulfidic Mine Tailings

Abstract: Mill tailings resulting from mining and metallurgical processes are usually disposed of into open-air impoundments, where they become subjected to chemical or microbial leaching. At the surface of the tailings, where oxic conditions prevail, acidophilic bacteria, such as thiobacilli, can oxidize sulfidic minerals (e.g. pyrite and pyrrhotite) and generate acidic metal-rich leachates as by-products of their metabolism. This, combined with chemical oxidation, leads to acid mine drainage (AMD). Biomineralization, whereby a proportion of the metal leachate is precipitated, can also occur in the oxidized tailings, often as a result of a close metal-bacteria interaction. Iron-rich precipitates are usually found on bacterial cell walls, and are thought to serve as nucleation sites for further mineralization within the tailings impoundments. As depth increases in mine tailings, oxygen depletion and the presence of water-saturated pores usually lead to anoxic conditions. Under such redox and chemical conditions, populations of sulfate-reducing bacteria (SRBs) can colonize the tailings. As a result of their metabolic activity, sulfate is reduced to hydrogen sulfide, which in turn can react with dissolved metals to form metal sulfide precipitates. Microbial sulfate reduction also generates alkalinity, although chemical dissolution of carbonate and oxide minerals probably also play an important role in the generation of alkaline conditions in mine tailings.

Search for past life on Mars: possible relic biogenic activity in martian meteorite ALH84001.

Abstract: Fresh fracture surfaces of the martian meteorite ALH84001 contain abundant polycyclic aromatic hydrocarbons (PAHs). These fresh fracture surfaces also display carbonate globules. Contamination studies suggest that the PAHs are indigenous to the meteorite. High-resolution scanning and transmission electron microscopy study of surface textures and internal structures of selected carbonate globules show that the globules contain fine-grained, secondary phases of single-domain magnetite and Fe-sulfides. The carbonate globules are similar in texture and size to some terrestrial bacterially induced carbonate precipitates. Although inorganic formation is possible, formation of the globules by biogenic processes could explain many of the observed features, including the PAHs. The PAHs, the carbonate globules, and their associated secondary mineral phases and textures could thus be fossil remains of a past martian biota.

Molecular Manipulation of Microstructures: Biomaterials, Ceramics, and Semiconductors

Abstract: Organic molecules can alter inorganic microstructures, offering a very powerful tool for the design of novel materials. In biological systems, this tool is often used to create microstructures in which the organic manipulators are a minority component. Three groups of materials-biomaterials, ceramics, and semiconductors-have been selected to illustrate this concept as used by nature and by synthetic laboratories exploring its potential in materials technology. In some of nature's biomaterials, macromolecules such as proteins, glycoproteins, and polysaccharides are used to control nucleation and growth of mineral phases and thus manipulate microstructure and physical properties. This concept has been used synthetically to generate apatite-based materials that can function as artificial bone in humans. Synthetic polymers and surfactants can also drastically change the morphology of ceramic particles, impart new functional properties, and provide new processing methods for the formation of useful objects. Interesting opportunities also exist in creating semiconducting materials in which molecular manipulators connect quantum dots or template cavities, which change their electronic properties and functionality.

Key roles of pH and calcium metabolism in microbial carbonate precipitation

Abstract: This paper reviews the general mechanismsof microbial carbonate precipitation and offersan alternative view on the role of calciummetabolism in this process, as well as on theoccurrence of species- and environment-specificcalcification.

Iron and Aluminum Hydroxysulfates from Acid Sulfate Waters

Abstract: Acid sulfate waters are produced mostly by the oxidation of common sulfide minerals such as pyrite, chalcopyrite, pyrrhotite, and marcasite in rocks, soils, sediments, and industrial wastes. This spontaneous process of mineral weathering plays a fundamental role in the supergene alteration of ore deposits, the formation of acid sulfate soils, and the mobilization and release of acidity and metals to surface and ground waters. The purely natural process of “acid rock drainage” is often intensified by human activities related to mining, mineral processing, construction, soil drainage, and dredging. Geochemical reaction rates are accelerated because physical disturbance gives greater exposure of mineral surfaces to air and water, and to microbes that catalyze the reaction process. Large quantities of reactive sulfides are also concentrated and exposed to air as a result of mining and mineral processing. Acid sulfate waters produce a number of fairly insoluble hydroxysulfate and oxyhydroxide minerals that precipitate during oxidation, hydrolysis, and neutralization. The objective of this chapter is to describe the formation, properties, fate, and environmental implications of the nano- to microphase hydroxy-sulfates of Fe and Al that are precipitated from acid sulfate waters. These minerals are commonly of poor crystallinity and difficult to characterize. Much remains to be learned about their occurrence, formation, and properties. ### Mine drainage The best known examples of acid sulfate waters are those released from mines where coal and metallic sulfide ores have been exploited (Ash et al. 1951, Barton 1978, Nordstrom 1982a, Rose and Cravotta 1998, Nordstrom and Alpers 1999). There may be as many as 500,000 inactive or abandoned mine sites in the United States alone (Lyon et al. 1993). Although most of these pose no immediate water-quality problem, Kleinmann (1989) estimated that about 19,300 km of streams and more than 72,000 ha of lakes and reservoirs have been …

Conservation of ornamental stone by Myxococcus xanthus-induced carbonate biomineralization.

Abstract: Increasing environmental pollution in urban areas has been endangering the survival of carbonate stones in monuments and statuary for many decades. Numerous conservation treatments have been applied for the protection and consolidation of these works of art. Most of them, however, either release dangerous gases during curing or show very little efficacy. Bacterially induced carbonate mineralization has been proposed as a novel and environmentally friendly strategy for the conservation of deteriorated ornamental stone. However, the method appeared to display insufficient consolidation and plugging of pores. Here we report that Myxococcus xanthus-induced calcium carbonate precipitation efficiently protects and consolidates porous ornamental limestone. The newly formed carbonate cements calcite grains by depositing on the walls of the pores without plugging them. Sonication tests demonstrate that these new carbonate crystals are strongly attached to the substratum, mostly due to epitaxial growth on preexisting calcite grains. The new crystals are more stress resistant than the calcite grains of the original stone because they are organic-inorganic composites. Variations in the phosphate concentrations of the culture medium lead to changes in local pH and bacterial productivity. These affect the structure of the new cement and the type of precipitated CaCO3 polymorph (vaterite or calcite). The manipulation of culture medium composition creates new ways of controlling bacterial biomineralization that in the future could be applied to the conservation of ornamental stone.