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Benjamin Buchfink
Researcher at Max Planck Society
Publications - 6
Citations - 7908
Benjamin Buchfink is an academic researcher from Max Planck Society. The author has contributed to research in topics: Metagenomics & Diamond. The author has an hindex of 5, co-authored 5 publications receiving 4534 citations. Previous affiliations of Benjamin Buchfink include University of Tübingen.
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Journal ArticleDOI
Fast and sensitive protein alignment using DIAMOND
TL;DR: DIAMOND is introduced, an open-source algorithm based on double indexing that is 20,000 times faster than BLASTX on short reads and has a similar degree of sensitivity.
Journal ArticleDOI
Sensitive protein alignments at tree-of-life scale using DIAMOND.
TL;DR: In this paper, an improved version of DIAMOND that greatly exceeds previous search performances and harnesses supercomputing to perform tree-of-life scale protein alignments in hours.
Journal ArticleDOI
Annotated bacterial chromosomes from frame-shift-corrected long-read metagenomic data.
Krithika Arumugam,Caner Bağcı,Irina Bessarab,Sina Beier,Benjamin Buchfink,Anna Górska,Guanglei Qiu,Daniel H. Huson,Daniel H. Huson,Rohan B. H. Williams +9 more
TL;DR: It is demonstrated that whole bacterial chromosomes can be obtained from an enriched community, by application of MinION sequencing to a sample from an EBPR bioreactor, producing 6 Gb of sequence that assembles into multiple closed bacterial chromosomes.
Posted Content
MetaScope - Fast and accurate identification of microbes in metagenomic sequencing data
TL;DR: MetaScope is a fast and accurate tool for analyzing (host-associated) metagenome datasets and is the winner of the 2013 DTRA software challenge entitled "Identify Organisms from a Stream of DNA Sequences".
Posted ContentDOI
Annotated bacterial chromosomes from frame-shift-corrected long read metagenomic data
Krithika Arumugam,Caner Bağcı,Irina Bessarab,Sina Beier,Benjamin Buchfink,Anna Górska,Guanglei Qiu,Daniel H. Huson,Daniel H. Huson,Rohan B. H. Williams +9 more
TL;DR: It is demonstrated that whole bacterial chromosomes can be obtained from a complex community, by application of MinION sequencing to a sample from an EBPR bio-reactor, producing 6Gb of sequence that assembles in to multiple closed bacterial chromosomes.