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Bruce W. Birren
Researcher at Broad Institute
Publications - 215
Citations - 125222
Bruce W. Birren is an academic researcher from Broad Institute. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 103, co-authored 205 publications receiving 113491 citations. Previous affiliations of Bruce W. Birren include Massachusetts Institute of Technology & California Institute of Technology.
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Journal ArticleDOI
Genomic analysis of globally diverse Mycobacterium tuberculosis strains provides insights into the emergence and spread of multidrug resistance
Abigail L. Manson,Keira A. Cohen,Keira A. Cohen,Thomas Abeel,Thomas Abeel,Christopher A. Desjardins,Derek T. Armstrong,Clifton E. Barry,Jeannette Brand,Sinéad B. Chapman,Sang Nae Cho,Andrei Gabrielian,James Gomez,Andreea M. Jodals,Moses Joloba,P. Jureen,Jong Seok Lee,Lesibana Anthony Malinga,Mamoudou Maiga,Dale Nordenberg,Ecaterina Noroc,Elena Romancenco,Alex N. Salazar,Alex N. Salazar,Willy Ssengooba,Ali Akbar Velayati,Kathryn Winglee,Aksana Zalutskaya,Laura E. Via,Gail H. Cassell,Susan E. Dorman,Jerrold J. Ellner,Parissa Farnia,James E. Galagan,James E. Galagan,Alex Rosenthal,Valeriu Crudu,Daniela Homorodean,Po-Ren Hsueh,Sujatha Narayanan,Alexander S. Pym,Alena Skrahina,Soumya Swaminathan,Martie van der Walt,David Alland,William R. Bishai,Ted Cohen,Ted Cohen,Sven Hoffner,Bruce W. Birren,Ashlee M. Earl +50 more
TL;DR: Molecular diagnostics that include markers for rifampicin resistance alone will be insufficient to identify pre-MDR strains, and incorporation of knowledge of polymorphisms that occur before the emergence of multidrug resistance, particularly katG p.Ser315Thr, into molecular diagnostics should enable targeted treatment of patients with pre-mDR-TB to prevent further development of MDR- TB.
Journal ArticleDOI
Campomelic Dysplasia Translocation Breakpoints Are Scattered over 1 Mb Proximal to SOX9: Evidence for an Extended Control Region
Dietmar Pfeifer,Ralf Kist,Ken Dewar,Keri Devon,Eric S. Lander,Bruce W. Birren,Lech Korniszewski,Elke Back,Gerd Scherer +8 more
TL;DR: Together, these data suggest that the chromosomal rearrangements most likely remove one or more cis-regulatory elements from an extended SOX9 control region.
Journal ArticleDOI
Mobile genes in the human microbiome are structured from global to individual scales
Ilana L. Brito,Ilana L. Brito,S. Yilmaz,Katherine H. Huang,L. Xu,Stacy D. Jupiter,Aaron Jenkins,Waisea Naisilisili,Manu Tamminen,Christopher Smillie,Jennifer R. Wortman,Bruce W. Birren,Ramnik J. Xavier,Ramnik J. Xavier,Ramnik J. Xavier,Paul C. Blainey,Anup K. Singh,Dirk Gevers,Eric J. Alm,Eric J. Alm +19 more
TL;DR: In this article, the authors investigate the function and distribution of mobile genes in the human microbiome, and in particular whether the gene pool is globally homogenous or constrained by human population structure.
Book ChapterDOI
Enabling a community to dissect an organism: overview of the Neurospora functional genomics project.
Jay C. Dunlap,Katherine A. Borkovich,Matthew R. Henn,Gloria E. Turner,Matthew S. Sachs,N. Louise Glass,Kevin McCluskey,Michael Plamann,James E. Galagan,Bruce W. Birren,Richard L. Weiss,Jeffrey P. Townsend,Jennifer J. Loros,Mary Anne Nelson,Randy Lambreghts,Hildur V. Colot,Gyungsoon Park,Patrick D. Collopy,Carol S. Ringelberg,Christopher M. Crew,Liubov Litvinkova,David DeCaprio,Heather M. Hood,Susan Curilla,Mi Shi,Matthew Crawford,Michael Koerhsen,Phil Montgomery,Lisa Larson,Matthew D. Pearson,Takao Kasuga,Chaoguang Tian,Meray Baştürkmen,Lorena Altamirano,Junhuan Xu +34 more
TL;DR: CDNA libraries generated in Project 4 document the overall complexity of expressed sequences in Neurospora, including alternative splicing alternative promoters and antisense transcripts, and drive the assembly of an SNP map presently populated by nearly 300 markers that will greatly accelerate the positional cloning of genes.
Journal ArticleDOI
Assembly of polymorphic genomes: algorithms and application to Ciona savignyi.
Jade P. Vinson,David B. Jaffe,Keith O'Neill,Elinor K. Karlsson,Nicole Stange-Thomann,Scott Anderson,Jill P. Mesirov,Nori Satoh,Yutaka Satou,Chad Nusbaum,Bruce W. Birren,James E. Galagan,Eric S. Lander +12 more
TL;DR: This method was developed to assemble the genome of the sea squirt Ciona savignyi, which was sequenced to a depth of 12.7 x from a single wild individual and determined that the sequenced individual had an extremely high heterozygosity rate.