Bruno Deflandre

Bio: Bruno Deflandre is an academic researcher from University of Bordeaux. The author has contributed to research in topics: Benthic zone & Sediment. The author has an hindex of 21, co-authored 57 publications receiving 1478 citations. Previous affiliations of Bruno Deflandre include Institut national de la recherche agronomique & Queen Mary University of London.

Anaerobic ammonium oxidation measured in sediments along the Thames estuary, United Kingdom.

Abstract: Until recently, denitrification was thought to be the only significant pathway for N(2) formation and, in turn, the removal of nitrogen in aquatic sediments. The discovery of anaerobic ammonium oxidation in the laboratory suggested that alternative metabolisms might be present in the environment. By using a combination of (15)N-labeled NH(4)(+), NO(3)(-), and NO(2)(-) (and (14)N analogues), production of (29)N(2) and (30)N(2) was measured in anaerobic sediment slurries from six sites along the Thames estuary. The production of (29)N(2) in the presence of (15)NH(4)(+) and either (14)NO(3)(-) or (14)NO(2)(-) confirmed the presence of anaerobic ammonium oxidation, with the stoichiometry of the reaction indicating that the oxidation was coupled to the reduction of NO(2)(-). Anaerobic ammonium oxidation proceeded at equal rates via either the direct reduction of NO(2)(-) or indirect reduction, following the initial reduction of NO(3)(-). Whether NO(2)(-) was directly present at 800 micro M or it accumulated at 3 to 20 micro M (from the reduction of NO(3)(-)), the rate of (29)N(2) formation was not affected, which suggested that anaerobic ammonium oxidation was saturated at low concentrations of NO(2)(-). We observed a shift in the significance of anaerobic ammonium oxidation to N(2) formation relative to denitrification, from 8% near the head of the estuary to less than 1% at the coast. The relative importance of anaerobic ammonium oxidation was positively correlated (P < 0.05) with sediment organic content. This report of anaerobic ammonium oxidation in organically enriched estuarine sediments, though in contrast to a recent report on continental shelf sediments, confirms the presence of this novel metabolism in another aquatic sediment system.

Comparison of the performances of two biotic indices based on the MacroBen database

Abstract: The pan-European MacroBen database was used to compare the AZTI Marine Biotic Index (AMBI) and the Benthic Quality Index (BQIES), 2 biotic indices which rely on 2 distinct assess- ments of species sensitivity/tolerance (i.e. AMBI EG and BQI E(S50)0.05) and which up to now have only been compared on restricted data sets. A total of 12 409 stations were selected from the data- base. This subset (indicator database) was later divided into 4 marine and 1 estuarine subareas. We computed E(S50)0.05 in 643 taxa, which accounted for 91.8% of the total abundances in the whole marine indicator database. AMBI EG and E(S50)0.05 correlated poorly. Marked heterogeneities in E(S50)0.05 between the marine and estuarine North Sea and between the 4 marine subareas suggest that sensitivity/tolerance levels vary among geographical areas. High values of AMBI were always associated with low values of BQIES, which underlines the coherence of these 2 indices in identifying stations with a bad ecological status (ES). Conversely, low values of AMBI were sometimes associated with low values of BQIES resulting in the attribution of a good ES by AMBI and a bad ES by BQIES. This was caused by the dominance of species classified as sensitive by AMBI and tolerant by BQIES. Some of these species are known to be sensitive to natural disturbance, which highlights the ten- dency of BQIES to automatically classify dominant species as tolerant. Both indices thus present weak- nesses in their way of assessing sensitivity/tolerance levels (i.e. existence of a single sensitivity/toler- ance list for AMBI and the tight relationship between dominance and tolerance for BQIES). Future studies should focus on the (1) clarification of the sensitivity/tolerance levels of the species identified as problematic, and (2) assessment of the relationships between AMBI EG and E(S50)0.05 within and between combinations of geographical areas and habitats.

Temporal variability of carbon recycling in coastal sediments influenced by rivers: assessing the impact of flood inputs in the Rhône River prodelta.

Abstract: . River deltas are particularly important in the marine carbon cycle as they represent the transition between terrestrial and marine carbon: linked to major burial zones, they are reprocessing zones where large carbon fluxes can be mineralized. In order to estimate this mineralization, sediment oxygen uptake rates were measured in continental shelf sediments and river prodelta over different seasons near the outlet of the Rhone River in the Mediterranean Sea. On a selected set of 10 stations in the river prodelta and nearby continental shelf, in situ diffusive oxygen uptake (DOU) and laboratory total oxygen uptake (TOU) measurements were performed in early spring and summer 2007 and late spring and winter 2008. In and ex situ DOU did not show any significant differences except for shallowest organic rich stations. Sediment DOU rates show highest values concentrated close to the river mouth (approx. 20 mmol O2 m−2 d−1) and decrease offshore to values around 4.5 mmol O2 m−2 d−1 with lowest gradients in a south west direction linked to the preferential transport of the finest riverine material. Core incubation TOU showed the same spatial pattern with an averaged TOU/DOU ratio of 1.2±0.4. Temporal variations of sediment DOU over different sampling periods, spring summer and late fall, were limited and benthic mineralization rates presented a stable spatial pattern. A flood of the Rhone River occurred in June 2008 and delivered up to 30 cm of new soft muddy deposit. Immediately after this flood, sediment DOU rates close to the river mouth dropped from around 15–20 mmol O2 m−2 d−1 to values close to 10 mmol O2 m−2 d−1, in response to the deposition near the river outlet of low reactivity organic matter associated to fine material. Six months later, the oxygen distribution had relaxed back to its initial stage: the initial spatial distribution was found again underlining the active microbial degradation rates involved and the role of further deposits. These results highlight the immediate response of the sediment oxygen system to flood deposit and the rapid relaxation of this system towards its initial state (6 months or less) potentially linked to further deposits of reactive material.

The Theory of Island Biogeography

Abstract: Preface to the Princeton Landmarks in Biology Edition vii Preface xi Symbols Used xiii 1. The Importance of Islands 3 2. Area and Number of Speicies 8 3. Further Explanations of the Area-Diversity Pattern 19 4. The Strategy of Colonization 68 5. Invasibility and the Variable Niche 94 6. Stepping Stones and Biotic Exchange 123 7. Evolutionary Changes Following Colonization 145 8. Prospect 181 Glossary 185 References 193 Index 201

Preservation of organic matter in sediments promoted by iron

Abstract: About one-fifth of organic carbon in sediments is bound to reactive iron phases, which are metastable over geological timescales and may therefore serve as a sink for the long-term storage of organic carbon. It is well known that solid iron phases can preserve organic carbon in soils, but it remains uncertain whether significant amounts of organic carbon can be preserved by iron in sediments. Yves Gelinas et al. study a range of freshwater and marine sediments and find that almost one-quarter of the organic carbon in the sediments tested is directly bound to reactive iron phases. They further estimate that about 22% of the total surface marine sedimentary organic carbon is preserved by its association with iron, which suggests that reactive iron phases are a key factor in the long-term storage of organic carbon. This 'rusty sink' links the global cycles of carbon, oxygen and sulphur. The biogeochemical cycles of iron and organic carbon are strongly interlinked. In oceanic waters, organic ligands have been shown to control the concentration of dissolved iron1. In soils, solid iron phases shelter and preserve organic carbon2, but the role of iron in the preservation of organic matter in sediments has not been clearly established. Here we use an iron reduction method previously applied to soils3 to determine the amount of organic carbon associated with reactive iron phases in sediments of various mineralogies collected from a wide range of depositional environments. Our findings suggest that 21.5 ± 8.6 per cent of the organic carbon in sediments is directly bound to reactive iron phases. We further estimate that a global mass of (19–45) × 1015 grams of organic carbon is preserved in surface marine sediments as a result of its association with iron4. We propose that these associations between organic carbon and iron, which are formed primarily through co-precipitation and/or direct chelation, promote the preservation of organic carbon in sediments. Because reactive iron phases are metastable over geological timescales, we suggest that they serve as an efficient ‘rusty sink’ for organic carbon, acting as a key factor in the long-term storage of organic carbon and thus contributing to the global cycles of carbon, oxygen and sulphur5.

Massive nitrogen loss from the Benguela upwelling system through anaerobic ammonium oxidation.

Abstract: In many oceanic regions, growth of phytoplankton is nitrogen-limited because fixation of N2 cannot make up for the removal of fixed inorganic nitrogen (NH+4, NO-2, and NO-3) by anaerobic microbial processes. Globally, 30-50% of the total nitrogen loss occurs in oxygen-minimum zones (OMZs) and is commonly attributed to denitrification (reduction of nitrate to N2 by heterotrophic bacteria). Here, we show that instead, the anammox process (the anaerobic oxidation of ammonium by nitrite to yield N2) is mainly responsible for nitrogen loss in the OMZ waters of one of the most productive regions of the world ocean, the Benguela upwelling system. Our in situ experiments indicate that nitrate is not directly converted to N2 by heterotrophic denitrification in the suboxic zone. In the Benguela system, nutrient profiles, anammox rates, abundances of anammox cells, and specific biomarker lipids indicate that anammox bacteria are responsible for massive losses of fixed nitrogen. We have identified and directly linked anammox bacteria to the removal of fixed inorganic nitrogen in the OMZ waters of an open-ocean setting. We hypothesize that anammox could also be responsible for substantial nitrogen loss from other OMZ waters of the ocean.