C
Cahid Cakir
Researcher at United States Department of Agriculture
Publications - 11
Citations - 2446
Cahid Cakir is an academic researcher from United States Department of Agriculture. The author has contributed to research in topics: Gene & Phytophthora infestans. The author has an hindex of 11, co-authored 11 publications receiving 2231 citations. Previous affiliations of Cahid Cakir include Agricultural Research Service & Ohio Agricultural Research and Development Center.
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Journal ArticleDOI
Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans.
Brian J. Haas,Sophien Kamoun,Sophien Kamoun,Michael C. Zody,Michael C. Zody,Rays H. Y. Jiang,Rays H. Y. Jiang,Robert E. Handsaker,Liliana M. Cano,Manfred Grabherr,Chinnappa D. Kodira,Chinnappa D. Kodira,Sylvain Raffaele,Trudy Torto-Alalibo,Trudy Torto-Alalibo,Tolga O. Bozkurt,Audrey M. V. Ah-Fong,Lucia Alvarado,Vicky L. Anderson,Miles R. Armstrong,Anna O. Avrova,Laura Baxter,Jim Beynon,Petra C. Boevink,Stephanie R. Bollmann,Jorunn I. B. Bos,Vincent Bulone,Guohong Cai,Cahid Cakir,James C. Carrington,Megan Chawner,Lucio Conti,Stefano Costanzo,Richard Ewan,Noah Fahlgren,Michael A. Fischbach,Johanna Fugelstad,Eleanor M. Gilroy,Sante Gnerre,Pamela J. Green,Laura J. Grenville-Briggs,John Griffith,Niklaus J. Grünwald,Karolyn Horn,Neil R. Horner,Chia-Hui Hu,Edgar Huitema,Dong-Hoon Jeong,Alexandra M. E. Jones,Jonathan D. G. Jones,Richard W. Jones,Elinor K. Karlsson,Sridhara G. Kunjeti,Kurt Lamour,Zhenyu Liu,Li-Jun Ma,Dan MacLean,Marcus C. Chibucos,Hayes McDonald,Jessica McWalters,Harold J. G. Meijer,William Morgan,Paul Morris,Carol A. Munro,Keith O'Neill,Keith O'Neill,Manuel D. Ospina-Giraldo,Andrés Pinzón,Leighton Pritchard,Bernard H Ramsahoye,Qinghu Ren,Silvia Restrepo,Sourav Roy,Ari Sadanandom,Alon Savidor,Sebastian Schornack,David C. Schwartz,Ulrike Schumann,Ben Schwessinger,Lauren Seyer,Ted Sharpe,Cristina Silvar,Jing Song,David J. Studholme,Sean M. Sykes,Marco Thines,Marco Thines,Peter J. I. van de Vondervoort,Vipaporn Phuntumart,Stephan Wawra,R. Weide,Joe Win,Carolyn A. Young,Shiguo Zhou,William E. Fry,Blake C. Meyers,Pieter van West,Jean B. Ristaino,Francine Govers,Paul R. J. Birch,Stephen C. Whisson,Howard S. Judelson,Chad Nusbaum +102 more
TL;DR: The sequence of the P. infestans genome is reported, which at ∼240 megabases (Mb) is by far the largest and most complex genome sequenced so far in the chromalveolates and probably plays a crucial part in the rapid adaptability of the pathogen to host plants and underpins its evolutionary potential.
Journal ArticleDOI
The C-terminal half of Phytophthora infestans RXLR effector AVR3a is sufficient to trigger R3a-mediated hypersensitivity and suppress INF1-induced cell death in Nicotiana benthamiana
Jorunn I. B. Bos,Thirumala-Devi Kanneganti,Carolyn A. Young,Cahid Cakir,Edgar Huitema,Joe Win,Miles R. Armstrong,Paul R. J. Birch,Sophien Kamoun +8 more
TL;DR: Structural-function experiments indicated that the 75-amino acid C-terminal half of AVR3aKI, which excludes the RXLR region, is sufficient for avirulence and suppression functions, consistent with the view that the N- terminal region of A VR3AKI and other RXLR effectors is involved in secretion and targeting but is not required for effector activity.
Journal ArticleDOI
Systemic Modulation of Gene Expression in Tomato by Trichoderma hamatum 382
G. Alfano,M. L. Lewis Ivey,Cahid Cakir,Jorunn I. B. Bos,Sally A. Miller,Laurence V. Madden,Sophien Kamoun,Harry A. J. Hoitink +7 more
TL;DR: This work showed that T. hamatum 382 actively induces systemic changes in plant physiology and disease resistance through systemic modulation of the expression of stress and metabolism genes.
Journal ArticleDOI
Synergistic Interactions of the Plant Cell Death Pathways Induced by Phytophthora infestans Nep1-Like Protein PiNPP1.1 and INF1 Elicitin
TL;DR: Using agroinfection with a binary Potato virus X vector, it is shown that PiNPP1.1 induces cell death in Nicotiana benthamiana and the host plant tomato, suggesting synergistic interplay between the two cell-death responses.
Journal ArticleDOI
Gene expression profiling during asexual development of the late blight pathogen Phytophthora infestans reveals a highly dynamic transcriptome.
Howard S. Judelson,Audrey M. V. Ah-Fong,George Aux,Anna O. Avrova,Catherine R. Bruce,Cahid Cakir,Luis da Cunha,Laura J. Grenville-Briggs,Maita Latijnhouwers,Wilco Ligterink,Harold J. G. Meijer,Samuel Roberts,Carrie S Thurber,Stephen C. Whisson,Paul R. J. Birch,Francine Govers,Sophien Kamoun,Pieter van West,John David Windass +18 more
TL;DR: Findings reveal many new aspects of oomycete biology, as well as potential targets for crop protection chemicals, and stage-specific transcripts do not appear to encode functional proteins.