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Chad Nusbaum
Researcher at Massachusetts Institute of Technology
Publications - 70
Citations - 69227
Chad Nusbaum is an academic researcher from Massachusetts Institute of Technology. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 48, co-authored 69 publications receiving 62980 citations. Previous affiliations of Chad Nusbaum include Barts Health NHS Trust & Uniformed Services University of the Health Sciences.
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Journal ArticleDOI
Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells
Michal Rabani,Joshua Z. Levin,Lin Fan,Xian Adiconis,Raktima Raychowdhury,Manuel Garber,Andreas Gnirke,Chad Nusbaum,Nir Hacohen,Nir Friedman,Ido Amit,Aviv Regev,Aviv Regev +12 more
TL;DR: This study combines metabolic labeling of RNA at high temporal resolution with advanced RNA quantification and computational modeling to estimate RNA transcription and degradation rates during the response of mouse dendritic cells to lipopolysaccharide.
Journal ArticleDOI
A structural variation reference for medical and population genetics
Ryan L. Collins,Ryan L. Collins,Harrison Brand,Harrison Brand,Konrad J. Karczewski,Konrad J. Karczewski,Xuefang Zhao,Xuefang Zhao,Jessica Alföldi,Jessica Alföldi,Laurent C. Francioli,Laurent C. Francioli,Amit Khera,Amit Khera,Chelsea Lowther,Chelsea Lowther,Laura D. Gauthier,Harold Z. Wang,Harold Z. Wang,Nicholas A. Watts,Nicholas A. Watts,Matthew Solomonson,Matthew Solomonson,Anne H. O’Donnell-Luria,Anne H. O’Donnell-Luria,Alexander Baumann,Ruchi Munshi,Mark Walker,Christopher W. Whelan,Yongqing Huang,Ted Brookings,Ted Sharpe,Matthew R. Stone,Matthew R. Stone,Elise Valkanas,Elise Valkanas,Jack Fu,Jack Fu,Grace Tiao,Grace Tiao,Kristen M. Laricchia,Kristen M. Laricchia,Valentin Ruano-Rubio,Christine Stevens,Namrata Gupta,Caroline N. Cusick,Lauren Margolin,Genome Aggregation Database Production Team,Kent D. Taylor,Henry J. Lin,Stephen S. Rich,Wendy S. Post,Yii-Der Ida Chen,Jerome I. Rotter,Chad Nusbaum,Anthony A. Philippakis,Eric S. Lander,Eric S. Lander,Eric S. Lander,Stacey Gabriel,Benjamin M. Neale,Sekar Kathiresan,Mark J. Daly,Eric Banks,Daniel G. MacArthur,Michael E. Talkowski +65 more
TL;DR: A large empirical assessment of sequence-resolved structural variants from 14,891 genomes across diverse global populations in the Genome Aggregation Database (gnomAD) provides a reference map for disease-association studies, population genetics, and diagnostic screening.
Journal ArticleDOI
Comparative functional genomics of the fission yeasts
Nicholas Rhind,Zehua Chen,Moran Yassour,Moran Yassour,Dawn Thompson,Brian J. Haas,Naomi Habib,Ilan Wapinski,Ilan Wapinski,Sushmita Roy,Michael F. Lin,David I. Heiman,Sarah Young,Kanji Furuya,Yabin Guo,Alison L. Pidoux,Huei Mei Chen,Barbara Robbertse,Jonathan M. Goldberg,Keita Aoki,Elizabeth H. Bayne,Aaron M. Berlin,Christopher A. Desjardins,Edward Dobbs,Livio Dukaj,Lin Fan,Michael Fitzgerald,Courtney French,Sharvari Gujja,Klavs R. Hansen,Daniel Keifenheim,Joshua Z. Levin,Rebecca A. Mosher,Carolin A. Müller,Jenna Pfiffner,Margaret Priest,Carsten Russ,Agata Smialowska,Agata Smialowska,Peter Swoboda,Sean M. Sykes,Matthew W. Vaughn,Sonya Vengrova,Ryan J. Yoder,Qiandong Zeng,Robin C. Allshire,David C. Baulcombe,Bruce W. Birren,William Brown,Karl Ekwall,Karl Ekwall,Manolis Kellis,Janet Leatherwood,Henry L. Levin,Hanah Margalit,Robert A. Martienssen,Conrad A. Nieduszynski,Joseph W. Spatafora,Nir Friedman,Jacob Z. Dalgaard,Peter Baumann,Peter Baumann,Peter Baumann,Hironori Niki,Aviv Regev,Aviv Regev,Chad Nusbaum +66 more
TL;DR: Differences in gene content and regulation explain why, unlike the budding yeast of Saccharomycotina, fission yeasts cannot use ethanol as a primary carbon source and provide tools for investigation across the Schizosaccharomyces clade.
Journal ArticleDOI
The immune cell landscape in kidneys of patients with lupus nephritis
Arnon Arazi,Deepak A. Rao,Celine C. Berthier,Anne Davidson,Yanyan Liu,Paul Hoover,Adam Chicoine,Thomas Eisenhaure,A. Helena Jonsson,Shuqiang Li,David J. Lieb,Fan Zhang,Kamil Slowikowski,Edward P. Browne,Akiko Noma,Danielle Sutherby,Scott Steelman,Dawn E. Smilek,Patti Tosta,William Apruzzese,Elena Massarotti,Maria Dall'Era,Meyeon Park,Diane L. Kamen,Richard A. Furie,Fernanda Payan-Schober,William F. Pendergraft,Elizabeth A. McInnis,Jill P. Buyon,Michelle Petri,Chaim Putterman,Kenneth C. Kalunian,E. Steve Woodle,James A. Lederer,David A. Hildeman,David A. Hildeman,Chad Nusbaum,Soumya Raychaudhuri,Matthias Kretzler,Jennifer H. Anolik,Michael B. Brenner,David Wofsy,Nir Hacohen,Betty Diamond +43 more
TL;DR: Analysis of kidney samples from patients with lupus nephritis and healthy control subjects revealed 21 subsets of leukocytes active in disease, including multiple populations of myeloid cells, T cells, natural killer cells and B cells that demonstrated both pro-inflammatory responses and inflammation-resolving responses.
Journal ArticleDOI
Genome evolution following host jumps in the Irish potato famine pathogen lineage
Sylvain Raffaele,Rhys A. Farrer,Liliana M. Cano,David J. Studholme,Dan MacLean,Marco Thines,Marco Thines,Rays H. Y. Jiang,Michael C. Zody,Sridhara G. Kunjeti,Nicole M. Donofrio,Blake C. Meyers,Chad Nusbaum,Sophien Kamoun +13 more
TL;DR: A group of papers analyzes pathogen genomes to find the roots of virulence, opportunism, and life-style determinants, demonstrating that dynamic repeat-rich genome compartments underpin accelerated gene evolution following host jumps in this pathogen lineage.