D. Ivanisevic

Bio: D. Ivanisevic is an academic researcher from University of Novi Sad. The author has contributed to research in topics: Wine grape & Organic farming. The author has an hindex of 4, co-authored 12 publications receiving 46 citations.

Microsatellite inferred genetic diversity and structure of Western Balkan grapevines (Vitis vinifera L.)

Abstract: A collection of 196 grapevine samples from five countries of the Western Balkan region, representing local and traditional cultivars, was genotyped with 22 SSR markers. Identity analysis revealed 125 unique genotypes, which were further used for diversity assessment. The average number of alleles per locus detected was 11 ± 3.53, ranging from 6 to 21. The low cumulative probability of identical genotypes (2.96 × 10−20) shown in this study implies an even distribution of alleles within the analyzed set of grapevines and a sufficient number of loci. On the basis of the discriminatory power of each SSR, a set of five markers (VVMD5, VVMD7, VVMD28, VChr3a, and VChr8b) was determined as sufficient for high-throughput discrimination of the target cultivars. The maximum discriminating power was evidenced for loci VVMD28 and Vchr8b (0.96, 0.94, respectively). A core collection covering the entire genetic diversity resulted in a set of 60 genotypes representing approximately 50 % of the samples from each country. Structure clustering of Balkan and West European cultivars resulted in four well distinct groups identified according to the classification of Negrul (1946). The lowest level of admixed genotypes was assigned for grapevines from Bosnia and Herzegovina (61 %) and the highest for Serbian (87 %) grapevines. In terms of grape use, the wine cultivars were divided into three groups and the fourth group was intermixed, with half wine and half table grapes. The highest Nei’s genetic distance (0.22) was discovered between Slovenian and Macedonian cultivars, while the lowest (0.09) was between Slovenian and Serbian cultivars. Macedonian cultivars were genetically most distant from the others (0.17). A similar pattern of differentiation among populations is seen with distance-based clustering. Analysis of molecular variance revealed only 1 % of genetic variation among groups of different origin, while the variation among individuals within geographical groups and within individuals explained 13 and 86 % of the total variation, respectively.

The impact of cluster thinning and leaf removal timing on the grape quality and concentration of monomeric anthocyanins in Cabernet-Sauvignon and Probus ( Vitis vinifera L.) wines

Abstract: Aim: Leaf removal around clusters and cluster thinning are techniques usually applied in cool-climate vineyards in order to achieve optimal grape maturity. However, the impact of the timing of these two operations differs across varieties. Thus, the aim of the present work was to investigate the effects of cluster thinning and leaf removal timing (performed at three specific time points) on grape quality and monomeric anthocyanins in the wines of Cabernet-Sauvignon and Probus (Kadarka × Cabernet-Sauvignon, Vitis vinifera L.) Methods and results: The experiment was conducted in Sremski Karlovci (Northern Serbia) in 2014, 2015, and 2016. Leaf removal was applied on six basal nodes of each shoot at three time points, 7 days after flowering, 30 days after flowering, and at veraison, i.e., at the onset of berry ripening. After cluster thinning, which was performed 7 days after flowering, one cluster per shoot was retained. On the treated vines, leaf removal treatment and cluster thinning were applied only once. Leaf removal was more effective than cluster thinning in respect to grape quality. Leaf removal, applied 7 and 30 days after flowering, decreased titratable acidity in Cabernet-Sauvignon, while in Probus an interaction of leaf removal and year was observed. Moreover, early leaf removal decreased the incidence of Botrytis sp. in Probus. The varieties reacted differently to cluster thinning in respect to grape quality: cluster thinning increased total soluble solids in Probus and lowered titratable acidity in Cabernet-Sauvignon. In 2015, both cluster thinning and leaf removal yielded changes in the anthocyanin ratios in the wines. Cluster thinning increased total and acylated anthocyanins in the wine of Cabernet-Sauvignon compared to wine derived from unthinned vines. The peonidin content was 40 % higher in the Cabernet-Sauvignon wine if the vines were subjected to leaf removal treatments. Conclusions: Cluster thinning and leaf removal affected both Cabernet-Sauvignon and Probus (Vitis vinifera L.) grape quality and wine composition. Early leaf removal was the most effective treatment in both varieties. Therefore, combined application of cluster thinning and early leaf removal is highly recommended in the production of high-quality red wines in Serbia. Significance and impact of the study: Timing of leaf removal application was usually investigated around flowering and veraison. Our results suggested that leaf removal between these two phenological stages also improves grape quality and changes the ratio of the monomeric anthocyanins in the wine.

Extent of wild–to–crop interspecific introgression in grapevine (Vitis vinifera) as a consequence of resistance breeding and implications for the crop species definition

Abstract: Abstract Over the past two centuries, introgression through repeated backcrossing has introduced disease resistance from wild grape species into the domesticated lineage Vitis vinifera subsp. sativa. Introgression lines are being cultivated over increasing vineyard surface areas, as their wines now rival in quality those obtained from preexisting varieties. There is, however, a lot of debate about whether and how wine laws defining commercial product categories, which are based on the classification of V. vinifera and interspecific hybrid grapes, should be revised to accommodate novel varieties that do not fit either category. Here, we developed a method of multilocus genotype analysis using short–read resequencing to identify haplotypic blocks of wild ancestry in introgression lines and quantify the physical length of chromosome segments free–of–introgression or with monoallelic and biallelic introgression. We used this genomic data to characterize species, hybrids and introgression lines and show that newly released resistant varieties contain 76.5–94.8% of V. vinifera DNA. We found that varietal wine ratings are not always commensurate with the percentage of V. vinifera ancestry and linkage drag of wild alleles around known resistance genes persists over at least 7.1–11.5 Mb, slowing down the recovery of the recurrent parental genome. This method also allowed us to identify the donor species of resistance haplotypes, define the ancestry of wild genetic background in introgression lines with complex pedigrees, validate the ancestry of the historic varieties Concord and Norton, and unravel sample curation errors in public databases.

Guiding principles for identification, evaluation and conservation of Vitis vinifera L. subsp. sylvestris

Abstract: Conservation of grapevine genetic resources is an important and long lasting task. Here, partners of the InWiGrape Activity of the European Cooperative Programme for Plant Genetic Resources have proposed a set of descriptors that will assist in identification, conservation and study of genetic resources of Vitis vinifera L. subsp. sylvestris. A distribution map of Vitis vinifera L. subsp. sylvestris populations in Europe was produced, with on-line access through the European Vitis Database. The several different aspects of conservation of Vitis vinifera L. subsp. sylvestris including bibliographical references, identification in the wild, in situ and ex situ conservation have been discussed. The descriptors and the map will assist different stakeholders, working on biodiversity and ecosystems in more effective conservation of wild grapevine genetic resources.

Genetic diversity of a Serbian grapevine germplasm collection based on morphoagronomic characteristics

Abstract: The objective of this study was to evaluate diversity and relationships among grapevine cultivars from the Serbian gene bank in Sremski Karlovci, and to identify the most useful variables for discrimination. A total of 54 grapevine cultivars have been studied. During the period 2000-2005, twelve quantitative and qualitative characteristics were evaluated using OIV categories to each trait. Characterization was done using multivariate statistical analyses: cluster and principal component analysis (PCA), Based on cluster analysis cultivars divided into three major groups and the clustering pattern was related to the classical eco-geographical grouping: occidentalis, pontica and orientalis. Beside geographic origin clustering position of cultivars throughout the dendrogram was related to main uses. The major part (70.1%) of the total variation presented was explained by four principal components. PC1 is highly correlated with the bunch and berry size and PC2 with the density of prostrate hairs of young shoot tip and the density of prostrate hairs between veins on the lower side of mature leaf. The overall arrangement of cultivars suggests considerable phenotypical (and presumably genetic) variability in studied germplasm collection. Furthermore, obtained results may be useful for further utilization of available genetic resources in gene bank managers, growing and breeding. [Projekat Ministarstva nauke Republike Srbije, br. TR 31063 i br III 43007]

Population genetic analysis in old Montenegrin vineyards reveals ancient ways currently active to generate diversity in Vitis vinifera.

Abstract: Global viticulture has evolved following market trends, causing loss of cultivar diversity and traditional practices. In Montenegro, modern viticulture co-exists with a traditional viticulture that still maintains ancient practices and exploits local cultivars. As a result, this region provides a unique opportunity to explore processes increasing genetic diversity. To evaluate the diversity of Montenegrin grapevines and the processes involved in their diversification, we collected and analyzed 419 samples in situ across the country (cultivated plants from old orchards and vines growing in the wild), and 57 local varieties preserved in a grapevine collection. We obtained 144 different genetic profiles, more than 100 corresponding to cultivated grapevines, representing a surprising diversity for one of the smallest European countries. Part of this high diversity reflects historical records indicating multiple and intense introduction events from diverse viticultural regions at different times. Another important gene pool includes many autochthonous varieties, some on the edge of extinction, linked in a complex parentage network where two varieties (Razaklija and Kratosija) played a leading role on the generation of indigenous varieties. Finally, analyses of genetic structure unveiled several putative proto-varieties, likely representing the first steps involved in the generation of new cultivars or even secondary domestication events.

Genetic Diversity, Population Structure, and Parentage Analysis of Croatian Grapevine Germplasm

Abstract: Croatian viticulture was most extensive at the beginning of the 20th century, when about 400 varieties were in use. Autochthonous varieties are the result of spontaneous hybridization from the pre-phylloxera era and are still cultivated today on about 35 % of vineyard area, while some exist only in repositories. We present what is the most comprehensive genetic analysis of all major Croatian national repositories, with a large number of microsatellite, or simple sequence repeat (SSR) markers, and it is also the first study to apply single nucleotide polymorphism (SNP) markers. After 212 accessions were fingerprinted, 95 were classified as unique to Croatian germplasm. Genetic diversity of Croatian germplasm is rather high considering its size. SNP markers proved useful for fingerprinting but less informative and practical than SSRs. Analysis of the genetic structure showed that Croatian germplasm is predominantly part of the Balkan grape gene pool. A high number of admixed varieties and synonyms is a consequence of complex pedigrees and migrations. Parentage analysis confirmed 24 full parentages, as well as 113 half-kinships. Unexpectedly, several key genitors could not be detected within the present Croatian germplasm. The low number of reconstructed parentages (19%) points to severe genetic erosion and stresses the importance of germplasm repositories.

Genetic characterization of Iranian grapes (Vitis vinifera L.) and their relationships with Italian ecotypes

Abstract: Grapevine (Vitis vinifera L) is one of the oldest and most important fruit crops in the world Iran is considered as one of the regions where grapevine plants have been used and taken into cultivation In the present study, 12 simple sequence repeat (SSR) markers were used to evaluate the genetic diversity among Iranian grape cultivars and their relationships with Italian ones The observed number of alleles (N) per locus varied from 6 to 20 and also the number of effective alleles (Ne) ranged from 134 to 200 among cultivars, indicating that the SSRs were highly informative The polymorphism information content (PIC) values ranged from 049 to 087 and classified the six loci as highly informative markers (PIC > 070) The mean observed heterozygosity (Ho) was higher (085) than the mean expected heterozygosity (He) (043), demonstrating a random union of gametes in the population Genetic similarity among cultivars ranged from 014 to 093, indicating high genetic variation among them UPGMA and Bayesian clustering analyses revealed high genetic variation among studied cultivars and grouped them into two main clusters The present findings might render striking information in breeding management strategies for genetic conservation and cultivar improvement

Palynological characteristics of selected Lamioideae taxa and its taxonomic significance.

Abstract: Lamioideae comprised the second-largest subfamily in Lamiaceae. Although considerable progress has recently been made in the taxonomic study of Lamioideae, the subfamily remains one of the most poorly investigated subfamily in Lamiaceae. Therefore, the present study was designed with the aim to document the pollen micromorphology of some selected Lamioideae taxa and its taxonomic significance from Pakistan. Pollen micromorphological features were observed using scanning electron microscopy. The pollen grains are monad, tricolpate, radially/bilateral symmetrical. The pollen grains were small to medium-sized having oblate, oblate/subspheroidal, and subspheroidal shape. Exine sculpturing was observed as reticulate, microreticulate, and bireticulate. The colpus surface ornamentation was found as verrucate, gemmate, scabrate, and psilate. There was a considerable variation between the species in the micromorphology, that is, the coarseness of the reticulum, thickness of the muri comprising the reticulum and the number of secondary lumina per primary lumen. Hence, this study documented the pollen morphology of some selected taxa of the subfamily Lamioideae from Pakistan and strengthens the taxonomic identification of subfamily based on pollen characters, which helps in the correct identification, discrimination of the species of Lamioideae at generic and species level.

Parentage Atlas of Italian Grapevine Varieties as Inferred From SNP Genotyping.

Abstract: The Italian grape germplasm is characterized by a high level of richness in terms of varieties number, with nearly 600 wine grape varieties listed in the Italian National Register of Grapevine Varieties and with a plethora of autochthonous grapes. In the present study an extended SNP genotyping has been carried out on Italian germplasm of cultivated Vitis vinifera subsp. sativa and Vitis hybrids. Several hundred Italian varieties maintained in the repositories of scientific Institutions and about one thousand additional varieties derived from previous studies on European, Southern Italy, Magna Graecia and Georgian germplasm were considered. The large genotyping data obtained were used to check the presence of homonyms and synonyms, determine parental relationships, and identify the main ancestors of traditional Italian cultivars and closely-related accessions. The parentage among a set of 1,232 unique varieties has been assessed. A total of 92 new parent-offspring (PO) pairs and 14 new PO trios were identified. The resulted parentage network suggested that the traditional Italian grapevine germplasm originates largely from a few central varieties geographically distributed into several areas of genetic influence: "Strinto porcino" and its offspring "Sangiovese", "Mantonico bianco" and "Aglianico" mainly as founder varieties of South-Western Italy (IT-SW); Italian Adriatic Coast (IT-AC); and Central Italy with most varieties being offsprings of "Visparola", "Garganega" and "Bombino bianco"; "Termarina (Sciaccarello)" "Orsolina" and "Uva Tosca" as the main varieties of North-Western Italy (IT-NW) and Central Italy. The pedigree reconstruction by full-sib and second-degree relationships highlighted the key role of some cultivars, and, in particular, the centrality of "Visparola" in the origin of Italian germplasm appeared clear. An hypothetical migration of this variety within the Italian Peninsula from South to North along the eastern side, as well as of "Sangiovese" from South to Central Italy along the Western side might be supposed. Moreover, it was also highlighted that, among the main founders of muscat varieties, "Moscato bianco" and "Zibibbo (Muscat of Alexandria)" have spread over the whole Italy, with a high contribution by the former to germplasm of the North-Western of the peninsula.