D
Daniel G. Peterson
Researcher at Mississippi State University
Publications - 108
Citations - 9103
Daniel G. Peterson is an academic researcher from Mississippi State University. The author has contributed to research in topics: Genome & Whole genome sequencing. The author has an hindex of 33, co-authored 106 publications receiving 7819 citations. Previous affiliations of Daniel G. Peterson include Iowa State University & University of Mississippi.
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Journal ArticleDOI
The Sorghum bicolor genome and the diversification of grasses
Andrew H. Paterson,John E. Bowers,Rémy Bruggmann,Inna Dubchak,Jane Grimwood,Heidrun Gundlach,Georg Haberer,Uffe Hellsten,Therese Mitros,Alexander Poliakov,Jeremy Schmutz,Manuel Spannagl,Haibao Tang,Xiyin Wang,Xiyin Wang,Thomas Wicker,Arvind K. Bharti,Jarrod Chapman,F. Alex Feltus,F. Alex Feltus,Udo Gowik,Igor V. Grigoriev,Eric Lyons,Christopher G. Maher,Mihaela Martis,Apurva Narechania,Robert Otillar,Bryan W. Penning,Asaf Salamov,Yu Wang,Lifang Zhang,Nicholas C. Carpita,Michael Freeling,Alan R. Gingle,C. Thomas Hash,Beat Keller,Patricia E. Klein,Stephen Kresovich,Maureen C. McCann,Ray Ming,Daniel G. Peterson,Daniel G. Peterson,Mehboob-ur-Rahman,Mehboob-ur-Rahman,Doreen Ware,Doreen Ware,Peter Westhoff,Klaus F. X. Mayer,Joachim Messing,Daniel S. Rokhsar,Daniel S. Rokhsar +50 more
TL;DR: An initial analysis of the ∼730-megabase Sorghum bicolor (L.) Moench genome is presented, placing ∼98% of genes in their chromosomal context using whole-genome shotgun sequence validated by genetic, physical and syntenic information.
Journal ArticleDOI
Sequencing of allotetraploid cotton ( Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement
Tianzhen Zhang,Yan Hu,Wenkai Jiang,Lei Fang,Xueying Guan,Jiedan Chen,Jinbo Zhang,Christopher A. Saski,Brian E. Scheffler,David M. Stelly,Amanda M. Hulse-Kemp,Qun Wan,Bingliang Liu,Chunxiao Liu,Sen Wang,Mengqiao Pan,Yangkun Wang,Dawei Wang,Wenxue Ye,Lijing Chang,Wenpan Zhang,Qingxin Song,Ryan C. Kirkbride,Xiao-Ya Chen,Elizabeth S. Dennis,Danny J. Llewellyn,Daniel G. Peterson,Peggy Thaxton,Don C. Jones,Qiong Wang,Xiaoyang Xu,Hua Zhang,Huaitong Wu,Lei Zhou,Gaofu Mei,Shuqi Chen,Yue Tian,Dan Xiang,Xinghe Li,Jian Ding,Qiyang Zuo,Linna Tao,Yunchao Liu,Ji Li,Yu Lin,Yuanyuan Hui,Zhisheng Cao,Caiping Cai,Xiefei Zhu,Zhi Jiang,Baoliang Zhou,Wangzhen Guo,Ruiqiang Li,Z. Jeffrey Chen +53 more
TL;DR: Genomic signatures of selection and domestication are associated with positively selected genes (PSGs) for fiber improvement in the A subgenome and for stress tolerance in the D subgenomes, suggesting asymmetric evolution.
Journal ArticleDOI
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres
Andrew H. Paterson,Jonathan F. Wendel,Heidrun Gundlach,Hui Guo,Jerry Jenkins,Dianchuan Jin,Danny J. Llewellyn,Kurtis C. Showmaker,Shengqiang Shu,Joshua A. Udall,Mi-Jeong Yoo,Robert L. Byers,Wei Chen,Adi Doron-Faigenboim,Mary V. Duke,Lei Gong,Jane Grimwood,Corrinne E. Grover,Kara Grupp,Guanjing Hu,Tae-Ho Lee,Jingping Li,Lifeng Lin,Tao Liu,Barry S. Marler,Justin T. Page,Alison W. Roberts,Elisson Romanel,William S. Sanders,Emmanuel Szadkowski,Xu Tan,Haibao Tang,Haibao Tang,Chunming Xu,Chunming Xu,Jinpeng Wang,Zining Wang,Dong Zhang,Lan Zhang,Hamid Ashrafi,Frank Bedon,John E. Bowers,Curt L. Brubaker,Curt L. Brubaker,Peng W. Chee,Sayan Das,Alan R. Gingle,Candace H. Haigler,David B. Harker,Lucia Vieira Hoffmann,Ran Hovav,Don C. Jones,Cornelia Lemke,Shahid Mansoor,Shahid Mansoor,Mehboob-ur Rahman,Lisa N. Rainville,Aditi Rambani,Umesh K. Reddy,Junkang Rong,Yehoshua Saranga,Brian E. Scheffler,Jodi A. Scheffler,David M. Stelly,Barbara A. Triplett,Allen Van Deynze,Maite F S Vaslin,V. N. Waghmare,Sally A. Walford,Robert J. Wright,Essam A. Zaki,Tianzhen Zhang,Elizabeth S. Dennis,Klaus F. X. Mayer,Daniel G. Peterson,Daniel S. Rokhsar,Xiyin Wang,Jeremy Schmutz +77 more
TL;DR: It is shown that an abrupt five- to sixfold ploidy increase approximately 60 million years (Myr) ago, and allopolyploidy reuniting divergent Gossypium genomes approximately 1–2 Myr ago, conferred about 30–36-fold duplication of ancestral angiosperm genes in elite cottons, genetic complexity equalled only by Brassica among sequenced angiosperms.
Journal ArticleDOI
Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs
Richard E. Green,Edward L. Braun,Joel Armstrong,Dent Earl,Ngan Nguyen,Glenn Hickey,Michael W. Vandewege,John St. John,Salvador Capella-Gutierrez,Todd A. Castoe,Todd A. Castoe,Colin Kern,Matthew K. Fujita,Juan C. Opazo,Jerzy Jurka,Kenji K. Kojima,Juan Caballero,Robert Hubley,Arian F.A. Smit,Roy N. Platt,Christine A. Lavoie,Meganathan P. Ramakodi,John W. Finger,Alexander Suh,Alexander Suh,Sally R. Isberg,Lee G. Miles,Amanda Y. Chong,Weerachai Jaratlerdsiri,Jaime Gongora,Chris Moran,Andrés Iriarte,John E. McCormack,Shane C. Burgess,Scott V. Edwards,Eric Lyons,Christina L. Williams,Matthew Breen,Jason T. Howard,Cathy R. Gresham,Daniel G. Peterson,Juergen Schmitz,David D. Pollock,David Haussler,David Haussler,Eric W. Triplett,Guojie Zhang,Naoki Irie,Erich D. Jarvis,Christopher A. Brochu,Carl J. Schmidt,Fiona M. McCarthy,Brant C. Faircloth,Brant C. Faircloth,Federico G. Hoffmann,Travis C. Glenn,Toni Gabaldón,Toni Gabaldón,Benedict Paten,David A. Ray,David A. Ray +60 more
TL;DR: An exceptionally slow rate of genome evolution within crocodilians at all levels is observed, consistent with a single underlying cause of a reduced rate of evolutionary change rather than intrinsic differences in base repair machinery.
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Empirical comparison of ab initio repeat finding programs
TL;DR: Side-by-side evaluations of six of the most widely used ab initio repeat finding programs reveal profound differences in the utility with some identifying virtually their entire substrate as repetitive, others making reasonable estimates of repetition, and some missing almost all repeats.