The rhizosphere supports the development and activity of a huge and diversified microbial community, including microorganisms capable to promote plant growth. Among the latter, plant growth-promoting rhizobacteria (PGPR) colonize roots of monocots and dicots, and enhance plant growth by direct and indirect mechanisms. Modification of root system architecture by PGPR implicates the production of phytohormones and other signals that lead, mostly, to enhanced lateral root branching and development of root hairs. PGPR also modify root functioning, improve plant nutrition and influence the physiology of the whole plant. Recent results provided first clues as to how PGPR signals could trigger these plant responses. Whether local and/or systemic, the plant molecular pathways involved remain often unknown. From an ecological point of view, it emerged that PGPR form coherent functional groups, whose rhizosphere ecology is influenced by a myriad of abiotic and biotic factors in natural and agricultural soils, and these factors can in turn modulate PGPR effects on roots. In this paper, we address novel knowledge and gaps on PGPR modes of action and signals, and highlight recent progress on the links between plant morphological and physiological effects induced by PGPR. We also show the importance of taking into account the size, diversity, and gene expression patterns of PGPR assemblages in the rhizosphere to better understand their impact on plant growth and functioning. Integrating mechanistic and ecological knowledge on PGPR populations in soil will be a prerequisite to develop novel management strategies for sustainable agriculture.

/pdf/plant-growth-promoting-rhizobacteria-and-root-system-3ygxbzsvj6.pdf

Plant growth-promoting rhizobacteria and root system functioning.

Biotechnological approach of improving plant salt tolerance using antioxidants as markers.

Crop yield reduction as a consequence of increasingly severe climatic events threatens global food security. Genetic loci that ensure productivity in challenging environments exist within the germplasm of crops, their wild relatives and species that are adapted to extreme environments. Selective breeding for the combination of beneficial loci in germplasm has improved yields in diverse environments throughout the history of agriculture. An effective new paradigm is the targeted identification of specific genetic determinants of stress adaptation that have evolved in nature and their precise introgression into elite varieties. These loci are often associated with distinct regulation or function, duplication and/or neofunctionalization of genes that maintain plant homeostasis.

Genetic mechanisms of abiotic stress tolerance that translate to crop yield stability.

Dramatic accumulation of proline is a common physiological response in plants exposed to various abiotic stresses. Accumulation of proline could be due to de novo synthesis, decreased degradation, lower utilization, or hydrolysis of proteins. Extensive intercellular proline transport occurs between the cytosol, chloroplasts, and mitochondria due to its compartmentalized metabolism. Although all functions of proline in stress tolerance are still a matter of debate, it is suggested that proline contributes to stabilization of sub-cellular structures, scavenging free radicals, and buffering cellular redox potential. It also chelates heavy metals, modulates cellular functions, and even triggers gene expression. Apparently, proline acts as stress-related signal exhibiting cross tolerance to a range of different stresses. Besides these significant roles, its metabolism is found to be coupled to several key pathways such as pentose phosphate, tricarboxylic acid, or urea cycles and contributes to, i.e., purine synthesis and the phenylpropanoid pathway. Although the molecular basis of regulation of proline metabolism is still largely obscure, the genetic engineering of proline content could lead to new opportunities to achieve plant stress tolerance.

Proline: a key player in plant abiotic stress tolerance

The human population is increasing at an alarming rate, whereas at the same time agricultural productivity is decreasing due to the effect of various environmental problems. In particular, cold stress is a serious threat to the sustainability of crop yields. Indeed, cold stress can lead to major crop losses. Various phenotypic symptoms in response to cold stress include poor germination, stunted seedlings, yellowing of leaves (chlorosis), reduced leaf expansion and wilting, and may lead to death of tissue (necrosis). Cold stress also severely hampers the reproductive development of plants. The major negative effect of cold stress is that it induces severe membrane damage. This damage is largely due to the acute dehydration associated with freezing during cold stress. Cold stress is perceived by the receptor at the cell membrane. Then a signal is transduced to switch on the cold-responsive genes and transcription factors for mediating stress tolerance. Understanding the mechanism of cold stress tolerance and genes involved in the cold stress signaling network is important for crop improvement. Here, I review cold stress tolerance mechanisms in plants. The major points discussed are the following: (1) physiological effects of cold stress, (2) sensing of cold temperatures and signal transduction, and (3) the role of various cold-responsive genes and transcription factors in the mechanism of cold stress tolerance.

https://hal.archives-ouvertes.fr/hal-00886535/document

Cold stress tolerance mechanisms in plants. A review

Alteration of antioxidant enzyme gene expression during cold acclimation of near isogenic wheat lines

The interaction between
 VRN
 -
 A1
 and
 FR
 -
 A2
 largely affect the frost tolerance of hexaploid wheat.
 Frost tolerance is critical for wheat survival during cold winters. Natural variation for this trait is mainly associated with allelic differences at the VERNALIZATION 1 (VRN1) and FROST RESISTANCE 2 (FR2) loci. VRN1 regulates the transition between vegetative and reproductive stages and FR2, a locus including several tandemly duplicated C-REPEAT BINDING FACTOR (CBF) transcription factors, regulates the expression of Cold-regulated genes. We identified sequence and copy number variation at these two loci among winter and spring wheat varieties and characterized their association with frost tolerance. We identified two FR-A2 haplotypes—‘FR-A2-S’ and ‘FR-A2-T’—distinguished by two insertion/deletions and ten single nucleotide polymorphisms within the CBF-A12 and CBF-A15 genes. Increased copy number of CBF-A14 was frequently associated with the FR-A2-T haplotype and with higher CBF14 transcript levels in response to cold. Factorial ANOVAs revealed significant interactions between VRN1 and FR-A2 for frost tolerance in both winter and spring panels suggesting a crosstalk between vernalization and cold acclimation pathways. The model including these two loci and their interaction explained 32.0 and 20.7 % of the variation in frost tolerance in the winter and spring panels, respectively. The interaction was validated in a winter wheat F
 4:5 population segregating for both genes. Increased VRN-A1 copy number was associated with improved frost tolerance among varieties carrying the FR-A2-T allele but not among those carrying the FR-A2-S allele. These results suggest that selection of varieties carrying the FR-A2-T allele and three copies of the recessive vrn-A1 allele would be a good strategy to improve frost tolerance in wheat.

/pdf/copy-number-and-haplotype-variation-at-the-vrn-a1-and-1sgdj3qcnl.pdf

Copy number and haplotype variation at the VRN-A1 and central FR-A2 loci are associated with frost tolerance in hexaploid wheat.

As one of the most severe environmental stresses, freezing stress can determine native flora in nature and severely reduce crop production. Many mechanisms have been proposed to explain the damage induced by freezing-thawing cycle, and oxidative stress caused by uncontrollable production of harmful reactive oxygen species (ROS) are partially contributed to causing the injury. Plants in temperate regions have evolved a unique but effective metabolism of protecting themselves called cold acclimation. Cold-acclimating plants undergo a complex but orchestrated metabolic process to increase cold hardness triggered by exposure to low temperature and shortened photoperiod and achieve the maximum freezing tolerance by a concerted regulation and expression of a number of cold responsive genes. A complicated enzymatic system have been evolved in plants to scavenge the ROS to protect themselves from oxidative stress, therefore, cold-acclimating plants are expected to increase the de novo synthesis of the genes of antioxidant genes. Indeed, many antioxidant genes increase the expression levels in response to low temperature. Furthermore, the higher expression of many antioxidant enzymes are positively correlated to inducing higher tolerance levels against freezing. All the information summarized here can be applied for developing crop and horticultural plants to have more freezing tolerance for higher production with better quality. There have been extensive studies on the activities of antioxidant enzymes and the gene regulation, however, more researches will be required in near future to elucidate the most effective antioxidant enzymes to induce highest freezing tolerance in a crop plant in a transformation process or a breeding program.

https://file.scirp.org/pdf/JACEN20120100006_52553755.pdf

Production of reactive oxygen species by freezing stress and the protective roles of antioxidant enzymes in plants

Cold-acclimated winter wheat plants were slowly frozen to −10°C, and then the temperature was either maintained at −10°C or was lowered further to −12°C. Expression levels of a total of 423 genes were significantly altered in these treatments; genes upregulated outnumbered those downregulated by about a 9:1 ratio. Sixty-eight genes were upregulated at least fivefold in all freezing treatments; 17 of these 68 encoded transcription factors including C-repeat binding factor (Cbf), WRKY, or other Zn-finger proteins, indicating strong upregulation of genes involved in transcription regulation. Sixteen of the 68 highly upregulated genes encoded kinases, phosphatases, calcium trafficking-related proteins, or glycosyltransferases, indicating upregulation of genes involved in signal transduction. Six genes encoding chlorophyll a/b binding-like proteins were upregulated uniquely in response to the -12°C treatment, suggesting a protective role of pigment-binding proteins in freezing stress response. Most genes responded similarly in the very freezing tolerant cultivar Norstar and in the moderately freezing tolerant Tiber, but some genes responded in opposite fashion in the two cultivars. These results showed that wheat crowns actively adapt as the temperature declines to potentially damaging levels, and genetic variation for this ability exists among cultivars.

Post-acclimation transcriptome adjustment is a major factor in freezing tolerance of winter wheat

Twenty-six wheat (Triticum aestivum L.) lines were tested for their ability to withstand remaining frozen for extended periods of time. Survival of acclimated seedlings was evaluated after remainin...

Daniel Z. Skinner

Papers

Alteration of antioxidant enzyme gene expression during cold acclimation of near isogenic wheat lines

Copy number and haplotype variation at the VRN-A1 and central FR-A2 loci are associated with frost tolerance in hexaploid wheat.

Production of reactive oxygen species by freezing stress and the protective roles of antioxidant enzymes in plants

Post-acclimation transcriptome adjustment is a major factor in freezing tolerance of winter wheat

The relationship of LT50 to prolonged freezing survival in winter wheat