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David L. Lahr
Researcher at Broad Institute
Publications - 25
Citations - 3237
David L. Lahr is an academic researcher from Broad Institute. The author has contributed to research in topics: Catalysis & Gene expression profiling. The author has an hindex of 11, co-authored 23 publications receiving 1792 citations. Previous affiliations of David L. Lahr include National Institute of Standards and Technology & Massachusetts Institute of Technology.
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Journal ArticleDOI
A Next Generation Connectivity Map: L1000 Platform and the First 1,000,000 Profiles.
Aravind Subramanian,Rajiv Narayan,Steven M. Corsello,Steven M. Corsello,David Peck,Ted Natoli,Xiaodong Lu,Joshua Gould,John F. Davis,Andrew A. Tubelli,Jacob K. Asiedu,David L. Lahr,Jodi E. Hirschman,Zihan Liu,Melanie Donahue,Bina Julian,Mariya Khan,David Wadden,Ian Smith,Daniel D. Lam,Arthur Liberzon,Courtney Toder,Mukta Bagul,Marek Orzechowski,Oana M. Enache,Federica Piccioni,Sarah A. Johnson,Nicholas J. Lyons,Alice H. Berger,Alice H. Berger,Alykhan F. Shamji,Angela N. Brooks,Angela N. Brooks,Anita Vrcic,Corey Flynn,Jacqueline Rosains,David Y. Takeda,David Y. Takeda,Roger Hu,Desiree Davison,Justin Lamb,Kristin Ardlie,Larson Hogstrom,Peyton Greenside,Nathanael S. Gray,Nathanael S. Gray,Paul A. Clemons,Serena J. Silver,Xiaoyun Wu,Wen-Ning Zhao,Wen-Ning Zhao,Willis Read-Button,Xiaohua Wu,Stephen J. Haggarty,Stephen J. Haggarty,Lucienne Ronco,Jesse S. Boehm,Stuart L. Schreiber,Stuart L. Schreiber,Stuart L. Schreiber,John G. Doench,Joshua A. Bittker,David E. Root,Bang Wong,Todd R. Golub +64 more
TL;DR: The expanded CMap is reported, made possible by a new, low-cost, high-throughput reduced representation expression profiling method that is shown to be highly reproducible, comparable to RNA sequencing, and suitable for computational inference of the expression levels of 81% of non-measured transcripts.
Posted ContentDOI
A Next Generation Connectivity Map: L1000 Platform And The First 1,000,000 Profiles
Aravind Subramanian,Rajiv Narayan,Steven M. Corsello,David Peck,Ted Natoli,Xiaodong Lu,Joshua Gould,John F. Davis,Andrew A. Tubelli,Jacob K. Asiedu,David L. Lahr,Jodi E. Hirschman,Zihan Liu,Melanie Donahue,Bina Julian,Mariya Khan,David Wadden,Ian Smith,Daniel D. Lam,Arthur Liberzon,Courtney Toder,Mukta Bagul,Marek Orzechowski,Oana M. Enache,Federica Piccioni,Alice H. Berger,Alykhan F. Shamji,Angela N. Brooks,Anita Vrcic,Corey Flynn,Jacqueline Rosains,David Y. Takeda,Desiree Davison,Justin Lamb,Kristin Ardlie,Larson Hogstrom,Nathanael S. Gray,Paul A. Clemons,Serena J. Silver,Xiaoyun Wu,Wen-Ning Zhao,Willis Read-Button,Xiaohua Wu,Stephen J. Haggarty,Lucienne Ronco,Jesse S. Boehm,Stuart L. Schreiber,John G. Doench,Joshua A. Bittker,David E. Root,Bang Wong,Todd R. Golub +51 more
TL;DR: A new, low-cost, high throughput reduced representation expression profiling method, L1000, is shown to be highly reproducible, comparable to RNA sequencing, and suitable for computational inference of the expression levels of 81% of non-measured transcripts.
Journal ArticleDOI
High-throughput Phenotyping of Lung Cancer Somatic Mutations
Alice H. Berger,Alice H. Berger,Angela N. Brooks,Angela N. Brooks,Xiaoyun Wu,Yashaswi Shrestha,Candace R. Chouinard,Federica Piccioni,Mukta Bagul,Atanas Kamburov,Atanas Kamburov,Marcin Imielinski,Marcin Imielinski,Larson Hogstrom,Cong Zhu,Xiaoping Yang,Sasha Pantel,Ryo Sakai,Jacqueline Watson,Jacqueline Watson,Nathan O. Kaplan,Joshua D. Campbell,Joshua D. Campbell,Shantanu Singh,David E. Root,Rajiv Narayan,Ted Natoli,David L. Lahr,Itay Tirosh,Pablo Tamayo,Gad Getz,Gad Getz,Bang Wong,John G. Doench,Aravind Subramanian,Todd R. Golub,Todd R. Golub,Matthew Meyerson,Matthew Meyerson,Jesse S. Boehm +39 more
TL;DR: Among these impactful variants are rare somatic, clinically actionable variants including EGFR S645C, ARAF S214C and S214F, ERBB2 S418T, and multiple BRAF variants, demonstrating that rare mutations can be functionally important in cancer.
Journal ArticleDOI
Evaluation of RNAi and CRISPR technologies by large-scale gene expression profiling in the Connectivity Map.
Ian Smith,Peyton Greenside,Ted Natoli,David L. Lahr,David Wadden,Itay Tirosh,Rajiv Narayan,David E. Root,Todd R. Golub,Aravind Subramanian,John G. Doench +10 more
TL;DR: This work shows that mitigating off-target effects is feasible in these datasets via computational methodologies to produce a consensus gene signature (CGS) and compared RNAi technology to clustered regularly interspaced short palindromic repeat (CRISPR)-based knockout by analysis of 373 single guide RNAs (sgRNAs) to show that the on-target efficacies are comparable, but CRISPR technology is far less susceptible to systematic off- target effects.
Journal ArticleDOI
Fabrication and gas sensing performance of parallel assemblies of metal oxide nanotubes supported by porous aluminum oxide membranes
Reit Artzi-Gerlitz,Kurt D. Benkstein,David L. Lahr,Joshua L. Hertz,Christopher B. Montgomery,John E. Bonevich,Steve Semancik,Michael J. Tarlov +7 more
TL;DR: In this article, a conductometric chemical sensor architecture based upon an assembly of parallel metal oxide nanotubes is described. But the authors do not consider the use of metal contacts for resistance measurements at the ends of the tubes.