D
Davide Cacchiarelli
Researcher at Harvard University
Publications - 77
Citations - 10575
Davide Cacchiarelli is an academic researcher from Harvard University. The author has contributed to research in topics: Medicine & Gene. The author has an hindex of 24, co-authored 55 publications receiving 7859 citations. Previous affiliations of Davide Cacchiarelli include University of Naples Federico II & Catholic University of the Sacred Heart.
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Journal ArticleDOI
The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells
Cole Trapnell,Davide Cacchiarelli,Davide Cacchiarelli,Jonna Grimsby,Prapti Pokharel,Shuqiang Li,Michael A. Morse,Michael A. Morse,Niall J. Lennon,Kenneth J. Livak,Tarjei S. Mikkelsen,Tarjei S. Mikkelsen,John L. Rinn,John L. Rinn,John L. Rinn +14 more
TL;DR: Monocle is described, an unsupervised algorithm that increases the temporal resolution of transcriptome dynamics using single-cell RNA-Seq data collected at multiple time points that revealed switch-like changes in expression of key regulatory factors, sequential waves of gene regulation, and expression of regulators that were not known to act in differentiation.
Journal ArticleDOI
A Long Noncoding RNA Controls Muscle Differentiation by Functioning as a Competing Endogenous RNA
Marcella Cesana,Davide Cacchiarelli,Ivano Legnini,Tiziana Santini,Olga Sthandier,Mauro Chinappi,Anna Tramontano,Anna Tramontano,Irene Bozzoni +8 more
TL;DR: It is demonstrated that linc-MD1 exerts the same control over differentiation timing in human myoblasts, and that its levels are strongly reduced in Duchenne muscle cells, indicating that the ceRNA network plays an important role in muscle differentiation.
Journal ArticleDOI
Perturbation of m6A Writers Reveals Two Distinct Classes of mRNA Methylation at Internal and 5′ Sites
Schraga Schwartz,Maxwell R. Mumbach,Marko Jovanovic,Timothy C. Wang,Timothy C. Wang,Karolina Maciag,Karolina Maciag,G. Guy Bushkin,Philipp Mertins,Dmitry Ter-Ovanesyan,Naomi Habib,Davide Cacchiarelli,Davide Cacchiarelli,Neville E. Sanjana,Elizaveta Freinkman,Michael E. Pacold,Michael E. Pacold,Rahul Satija,Tarjei S. Mikkelsen,Tarjei S. Mikkelsen,Nir Hacohen,Nir Hacohen,Feng Zhang,Feng Zhang,Feng Zhang,Steven A. Carr,Eric S. Lander,Eric S. Lander,Eric S. Lander,Aviv Regev,Aviv Regev,Aviv Regev +31 more
TL;DR: A dense network of proteins interacting with METTL3, a component of the methyltransferase complex, is identified, and it is shown that three of them (WTAP, METTL14, and KIAA1429) are required for methylation.
Journal ArticleDOI
Extracellular matrix hydrogel derived from decellularized tissues enables endodermal organoid culture.
Giovanni Giuseppe Giobbe,Claire Crowley,Camilla Luni,Sara Campinoti,Sara Campinoti,Moustafa Khedr,Kai Kretzschmar,Martina M. De Santis,Elisa Zambaiti,Federica Michielin,L Meran,L Meran,Qianjiang Hu,Gijs van Son,Luca Urbani,Anna Manfredi,Monica Giomo,Simon Eaton,Davide Cacchiarelli,Vivian S. W. Li,Hans Clevers,Paola Bonfanti,Paola Bonfanti,Nicola Elvassore,Nicola Elvassore,Nicola Elvassore,Paolo De Coppi,Paolo De Coppi +27 more
TL;DR: The derivation of GMP-compliant hydrogels from decellularized porcine small intestine which support formation and growth of human gastric, liver, pancreatic and small intestinal organoids are demonstrated.
Journal ArticleDOI
LIN28 Regulates Stem Cell Metabolism and Conversion to Primed Pluripotency.
Jin Zhang,Sutheera Ratanasirintrawoot,Sutheera Ratanasirintrawoot,Sriram Chandrasekaran,Zhaoting Wu,Scott B. Ficarro,Chunxiao Yu,Christian A. Ross,Davide Cacchiarelli,Qing Xia,Marc T. Seligson,Gen Shinoda,Wen Xie,Patrick Cahan,Longfei Wang,Shyh Chang Ng,Supisara Tintara,Cole Trapnell,Cole Trapnell,Tamer T. Onder,Yuin-Han Loh,Tarjei S. Mikkelsen,Tarjei S. Mikkelsen,Piotr Sliz,Michael A. Teitell,John M. Asara,Jarrod A. Marto,Hu Li,James J. Collins,James J. Collins,James J. Collins,George Q. Daley +31 more
TL;DR: It is shown that, like LIN28A, LIN28B can function effectively with NANOG, OCT4, and SOX2 in reprogramming to pluripotency and that reactivation of both endogenousLIN28A and LIN28 B loci are required for maximal reprograming efficiency.