Donald G. Ott

Bio: Donald G. Ott is an academic researcher from Los Alamos National Laboratory. The author has contributed to research in topics: Tetrazine & Liquid scintillation counting. The author has an hindex of 19, co-authored 46 publications receiving 1449 citations. Previous affiliations of Donald G. Ott include University of New Mexico.

Liquid Scintillators. V. Absorption and Fluorescence Spectra of 2,5-Diaryloxazoles and Related Compounds1

Abstract: Ultraviolet absorption data and wave lengths of maximum emission and mean wave lengths of fluorescence are presented. The synthesis and evaluation as scintillator solutes of previously unreported compounds are given.

DNA sequencing with chain-terminating inhibitors

Abstract: A new method for determining nucleotide sequences in DNA is described. It is similar to the “plus and minus” method [Sanger, F. & Coulson, A. R. (1975) J. Mol. Biol. 94, 441-448] but makes use of the 2′,3′-dideoxy and arabinonucleoside analogues of the normal deoxynucleoside triphosphates, which act as specific chain-terminating inhibitors of DNA polymerase. The technique has been applied to the DNA of bacteriophage ϕX174 and is more rapid and more accurate than either the plus or the minus method.

Real-Time DNA Sequencing from Single Polymerase Molecules

Abstract: We present single-molecule, real-time sequencing data obtained from a DNA polymerase performing uninterrupted template-directed synthesis using four distinguishable fluorescently labeled deoxyribonucleoside triphosphates (dNTPs). We detected the temporal order of their enzymatic incorporation into a growing DNA strand with zero-mode waveguide nanostructure arrays, which provide optical observation volume confinement and enable parallel, simultaneous detection of thousands of single-molecule sequencing reactions. Conjugation of fluorophores to the terminal phosphate moiety of the dNTPs allows continuous observation of DNA synthesis over thousands of bases without steric hindrance. The data report directly on polymerase dynamics, revealing distinct polymerization states and pause sites corresponding to DNA secondary structure. Sequence data were aligned with the known reference sequence to assay biophysical parameters of polymerization for each template position. Consensus sequences were generated from the single-molecule reads at 15-fold coverage, showing a median accuracy of 99.3%, with no systematic error beyond fluorophore-dependent error rates.

Real-time DNA sequencing from single polymerase molecules.

Abstract: Pacific Biosciences has developed a method for real-time sequencing of single DNA molecules (Eid et al., 2009), with intrinsic sequencing rates of several bases per second and read lengths into the kilobase range. Conceptually, this sequencing approach is based on eavesdropping on the activity of DNA polymerase carrying out template-directed DNA polymerization. Performed in a highly parallel operational mode, sequential base additions catalyzed by each polymerase are detected with terminal phosphate-linked, fluorescence-labeled nucleotides. This chapter will first outline the principle of this single-molecule, real-time (SMRT) DNA sequencing method, followed by descriptions of its underlying components and typical sequencing run conditions. Two examples are provided which illustrate that, in addition to the DNA sequence, the dynamics of DNA polymerization from each enzyme molecules is directly accessible: the determination of base-specific kinetic parameters from single-molecule sequencing reads, and the characterization of DNA synthesis rate heterogeneities.

Visibility: Science and Regulation

Abstract: The 1999 Regional Haze Rule provides a context for this review of visibility, the science that describes it, and the use of that science in regulatory guidance The scientific basis for the 1999 regulation is adequate The deciview metric that tracks progress is an imperfect but objective measure of what people see near the prevailing visual range The definition of natural visibility conditions is adequate for current planning, but it will need to be refined as visibility improves Emissions from other countries will set achievable levels above those produced by natural sources Some natural events, notably dust storms and wildfires, are episodic and cannot be represented by annual average background values or emission estimates Sulfur dioxide (SO2) emission reductions correspond with lower sulfate (SO4 2−) concentrations and visibility im-provements in the regions where these have occurred Non-road emissions have been growing more rapidly than emissions from other sources, which have remained