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Donald L. DeAngelis

Bio: Donald L. DeAngelis is an academic researcher from United States Geological Survey. The author has contributed to research in topics: Population & Mutualism (biology). The author has an hindex of 56, co-authored 291 publications receiving 23885 citations. Previous affiliations of Donald L. DeAngelis include University of Miami & University of Alabama in Huntsville.


Papers
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Journal ArticleDOI
TL;DR: The definition of ODD is revised to clarify aspects of the original version and thereby facilitate future standardization of ABM descriptions and improves the rigorous formulation of models and helps make the theoretical foundations of large models more visible.

2,186 citations

Journal ArticleDOI
11 Nov 2005-Science
TL;DR: This paper argues that recent advances in ecological modeling have come together in a general strategy that provides a unifying framework for decoding the internal organization of agent-based complex systems and may lead toward unifying algorithmic theories of the relation between adaptive behavior and system complexity.
Abstract: Agent-based complex systems are dynamic networks of many interacting agents; examples include ecosystems, financial markets, and cities. The search for general principles underlying the internal organization of such systems often uses bottom-up simulation models such as cellular automata and agent-based models. No general framework for designing, testing, and analyzing bottom-up models has yet been established, but recent advances in ecological modeling have come together in a general strategy we call pattern-oriented modeling. This strategy provides a unifying framework for decoding the internal organization of agent-based complex systems and may lead toward unifying algorithmic theories of the relation between adaptive behavior and system complexity.

1,933 citations

Journal ArticleDOI
TL;DR: In this paper, the authors developed three indices of pattern derived from information theory and fractal geometry for 94 quadrangles covering most of the eastern United States using digitized maps.
Abstract: Landscape ecology deals with the patterning of ecosystems in space. Methods are needed to quantify aspects of spatial pattern that can be correlated with ecological processes. The present paper develops three indices of pattern derived from information theory and fractal geometry. Using digitized maps, the indices are calculated for 94 quadrangles covering most of the eastern United States. The indices are shown to be reasonably independent of each other and to capture major features of landscape pattern. One of the indices, the fractal dimension, is shown to be correlated with the degree of human manipulation of the landscape.

1,453 citations

Journal ArticleDOI
01 Jul 1975-Ecology
TL;DR: The analyses suggest that realistic classes of consumer—resource models exist which do not obey Kolmogorov's Criteria but are nevertheless globally stable, and increases in maximum feeding rate may, under certain circumstances, result in decreases in consumer population.
Abstract: A nonlinear function general enough to include the effects of feeding saturation and intraspecific consumer interference is used to represent the transfer of material or energy from one trophic level to another. The function agrees with some recent experimental data on feeding rates. A model using this feeding rate function is subjected to equilibrium and stability analyses to ascertain its mathematical implications. The anaylses lead to several observations; for example, increases in maximum feeding rate may, under certain circumstances; result in decreases in consumer population and mutal interference between consumers is a major stabilizing factor in a nonlinear system. The analyses also suggest that realistic classes of consumer—resource models exist which do not obey Kolmogorov's Criteria but are nevertheless globally stable. See full-text article at JSTOR

1,036 citations


Cited by
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28 Jul 2005
TL;DR: PfPMP1)与感染红细胞、树突状组胞以及胎盘的单个或多个受体作用,在黏附及免疫逃避中起关键的作�ly.
Abstract: 抗原变异可使得多种致病微生物易于逃避宿主免疫应答。表达在感染红细胞表面的恶性疟原虫红细胞表面蛋白1(PfPMP1)与感染红细胞、内皮细胞、树突状细胞以及胎盘的单个或多个受体作用,在黏附及免疫逃避中起关键的作用。每个单倍体基因组var基因家族编码约60种成员,通过启动转录不同的var基因变异体为抗原变异提供了分子基础。

18,940 citations

Journal ArticleDOI
TL;DR: Preface to the Princeton Landmarks in Biology Edition vii Preface xi Symbols used xiii 1.
Abstract: Preface to the Princeton Landmarks in Biology Edition vii Preface xi Symbols Used xiii 1. The Importance of Islands 3 2. Area and Number of Speicies 8 3. Further Explanations of the Area-Diversity Pattern 19 4. The Strategy of Colonization 68 5. Invasibility and the Variable Niche 94 6. Stepping Stones and Biotic Exchange 123 7. Evolutionary Changes Following Colonization 145 8. Prospect 181 Glossary 185 References 193 Index 201

14,171 citations

Journal ArticleDOI
TL;DR: A review of predictive habitat distribution modeling is presented, which shows that a wide array of models has been developed to cover aspects as diverse as biogeography, conservation biology, climate change research, and habitat or species management.

6,748 citations

Journal ArticleDOI
TL;DR: A series of common pitfalls in quantifying and comparing taxon richness are surveyed, including category‐subcategory ratios (species-to-genus and species-toindividual ratios) and rarefaction methods, which allow for meaningful standardization and comparison of datasets.
Abstract: Species richness is a fundamental measurement of community and regional diversity, and it underlies many ecological models and conservation strategies. In spite of its importance, ecologists have not always appreciated the effects of abundance and sampling effort on richness measures and comparisons. We survey a series of common pitfalls in quantifying and comparing taxon richness. These pitfalls can be largely avoided by using accumulation and rarefaction curves, which may be based on either individuals or samples. These taxon sampling curves contain the basic information for valid richness comparisons, including category‐subcategory ratios (species-to-genus and species-toindividual ratios). Rarefaction methods ‐ both sample-based and individual-based ‐ allow for meaningful standardization and comparison of datasets. Standardizing data sets by area or sampling effort may produce very different results compared to standardizing by number of individuals collected, and it is not always clear which measure of diversity is more appropriate. Asymptotic richness estimators provide lower-bound estimates for taxon-rich groups such as tropical arthropods, in which observed richness rarely reaches an asymptote, despite intensive sampling. Recent examples of diversity studies of tropical trees, stream invertebrates, and herbaceous plants emphasize the importance of carefully quantifying species richness using taxon sampling curves.

5,706 citations

Journal ArticleDOI
TL;DR: Stabilizing mechanisms are essential for species coexistence and include traditional mechanisms such as resource partitioning and frequency-dependent predation, as well as mechanisms that depend on fluctuations in population densities and environmental factors in space and time.
Abstract: ▪ Abstract The focus of most ideas on diversity maintenance is species coexistence, which may be stable or unstable. Stable coexistence can be quantified by the long-term rates at which community members recover from low density. Quantification shows that coexistence mechanisms function in two major ways: They may be (a) equalizing because they tend to minimize average fitness differences between species, or (b) stabilizing because they tend to increase negative intraspecific interactions relative to negative interspecific interactions. Stabilizing mechanisms are essential for species coexistence and include traditional mechanisms such as resource partitioning and frequency-dependent predation, as well as mechanisms that depend on fluctuations in population densities and environmental factors in space and time. Equalizing mechanisms contribute to stable coexistence because they reduce large average fitness inequalities which might negate the effects of stabilizing mechanisms. Models of unstable coexitence...

5,240 citations