Durbar Ray

Bio: Durbar Ray is an academic researcher from National Institute of Oceanography, India. The author has contributed to research in topics: Hydrothermal circulation & Seafloor spreading. The author has an hindex of 9, co-authored 26 publications receiving 616 citations.

Molecular Biomarkers: Their significance and application in marine pollution monitoring

Abstract: This paper presents an overview of the significance of the use of molecular biomarkers as diagnostic and prognostic tools for marine pollution monitoring. In order to assess the impact of highly persistent pollutants such as polychlorinated biphenyls (PCB), polychlorinated dibenzo–dioxins (PCDD), polychlorinated dibenzo–furans (PCDF), polynuclear aromatic hydrocarbons (PAH), tributyltin (TBT) and other toxic metals on the marine ecosystem a suite of biomarkers are being extensively used worldwide. Among the various types of biomarkers, the following have received special attention: cytochrome P4501A induction, DNA integrity, acetylcholinesterase activity and metallothionein induction. These biomarkers are being used to evaluate exposure of various species of sentinel marine organisms (e.g. mussels, clams, oysters, snails, fishes, etc.) to and the effect of various contaminants (organic xenobiotics and metals) using different molecular approaches [biochemical assays, enzyme linked immuno-sorbent assays (ELISA), spectrophotometric, fluorometric measurement, differential pulsed polarography, liquid chromatography, atomic absorption spectrometry]. The induction of the biotransformation enzyme, cytochrome P4501A in fishes (Callionymus lyra, Limanda limanda, Serranus sp., Mullus barbatus) and mussels (Dreissena polymorpha) by various xenobiotic contaminants such as PCBs, PAHs, PCDs is used as a biomarker of exposure to such organic pollutants. The induction of cytochrome P4501A is involved in chemical carcinogenesis through catalysis of the covalent bonding of organic contaminants to a DNA strand leading to formation of DNA adduct. Measurement of the induction of cytochrome P4501A in terms of EROD (7-ethoxy resorufin O-deethylase) activity is successfully used as a potential biomarker of exposure to xenobiotic contaminants in marine pollution monitoring.

Acetylcholinesterase activities in marine snail (Cronia contracta) as a biomarker of neurotoxic contaminants along the Goa coast, West coast of India

Abstract: The measurement of acetylcholinesterase (AChE) activity is used worldwide as a biomarker of environmental contamination due to neurotoxic substances. In the present study the AChE activities was measured in marine snails (Cronia contracta) collected seasonally from six sampling sites (viz. Arambol, Anjuna, Dona Paula, Vasco, Velsao and Palolem) along the Goa coast during the pre-monsoon (April, 2004), monsoon (September, 2004) and post-monsoon (November, 2004) periods. The AChE activities in C. contracta showed wide variation along the Goa coast. It was found to be quite high at the reference site, Palolem (23.97, 21.72 and 24.85) throughout the sampling period (April–November, 2004). The AChE activities in C. contracta decreased significantly at Vasco (44.6–52.4% reduction) followed by Dona Paula (24.9–36.2% reduction), Velasao (10.8–35.9% reduction), Arambol (12.6–37.3% reduction) and Anjuna (0–12.7% reduction). Such a significant variation of AChE activities in the marine snail along the Goa coast can be attributed to neurotoxic substances prevalent in those regions. The high concentration of different neurotoxic metals (lead, cadmium, copper, manganese and iron) and petroleum hydrocarbons in the tissues of the marine snails at Dona Paula, Vasco and Velsao clearly substantiate reduction of AChE activities in C. contracta. The in vitro studies on the inhibition of AChE by different metals and PHC indicated that lead, cadmium and copper are the most predominant inhibitor. Based on the AChE activities in C. contracta the sampling sites along the Goa coast can be classified into three major clusters such as highly contaminated sites (Dona Paula, Vasco and Velsao), moderately contaminated sites (Arambol, Anjuna) and least contaminated site (Palolem).

Hydrothermal plumes over the Carlsberg Ridge, Indian Ocean

Abstract: [1] Indian Ocean ridges north of the Rodriguez Triple Junction remain poorly explored for seafloor hydrothermal activity, with only two active sites confirmed north of 25°S. We conducted water column surveys and sampling in 2007 and 2009 to search for hydrothermal plumes over a segment of the Carlsberg Ridge. Here we report evidence for two separate vent fields, one near 3°42′N, 63°40′E and another near 3°41.5′N, 63°50′E, on a segment that is apparently sparsely magmatic. Both sites appear to be located on off-axis highs at the top of the southern axial valley wall, at depths of ∼3600 m or shallower (∼1000 m above the valley floor). At the 63°40′E site, plume sampling found local maxima in light scattering, temperature anomaly, oxidation-reduction potential (ORP), dissolved Mn, and3He. No water samples are available from the 63°50′E site, but it showed robust light-scattering and ORP anomalies at multiple depths, implying multiple sources. ORP anomalies are very short-lived, so the strong signals at both sites suggest that fluid sources lie within a few kilometers or less from the plume sampling locations. Although ultramafic rocks have been recovered near these sites, the light-scattering and dissolved Mn anomalies imply that the plumes do not arise from a system driven solely by exothermic serpentinization (e.g., Lost City). Instead, the source fluids may be a product of both ultramafic and basaltic/gabbroic fluid-rock interaction, similar to the Rainbow and Logatchev fields on the Mid-Atlantic Ridge.

Rare earth elements:A review of applications, occurrence, exploration, analysis, recycling, and environmental impact

Abstract: Rare earth elements (REE) include the lanthanide series elements (La, Ce, Pr, Nd, Pm, Sm, Eu, Gd, Tb, Dy, Ho, Er, Tm, Yb, and Lu) plus Sc and Y. Currently these metals have become very critical to several modern technologies ranging from cell phones and televisions to LED light bulbs and wind turbines. This article summarizes the occurrence of these metals in the Earth's crust, their mineralogy, different types of deposits both on land and oceans from the standpoint of the new data with more examples from the Indian subcontinent. In addition to their utility to understand the formation of the major Earth reservoirs, multi-faceted updates on the applications of REE in agriculture and medicine including new emerging ones are presented. Environmental hazards including human health issues due to REE mining and large-scale dumping of e-waste containing significant concentrations of REE are summarized. New strategies for the future supply of REE including recent developments in the extraction of REE from coal fired ash and recycling from e-waste are presented. Recent developments in individual REE separation technologies in both metallurgical and recycling operations have been highlighted. An outline of the analytical methods for their precise and accurate determinations required in all these studies, such as, X-ray fluorescence spectrometry (XRF), laser induced breakdown spectroscopy (LIBS), instrumental neutron activation analysis (INAA), inductively coupled plasma optical emission spectrometry (ICP-OES), glow discharge mass spectrometry (GD-MS), inductively coupled plasma mass spectrometry (including ICP-MS, ICP-TOF-MS, HR-ICP-MS with laser ablation as well as solution nebulization) and other instrumental techniques, in different types of materials are presented.

Environmental Proteomics: Changes in the Proteome of Marine Organisms in Response to Environmental Stress, Pollutants, Infection, Symbiosis, and Development

Abstract: Environmental proteomics, the study of changes in the abundance of proteins and their post-translational modifications, has become a powerful tool for generating hypotheses regarding how the environment affects the biology of marine organisms. Proteomics discovers hitherto unknown cellular effects of environmental stressors such as changes in thermal, osmotic, and anaerobic conditions. Proteomic analyses have advanced the characterization of the biological effects of pollutants and identified comprehensive and pollutant-specific sets of biomarkers, especially those highlighting post-translational modifications. Proteomic analyses of infected organisms have highlighted the broader changes occurring during immune responses and how the same pathways are attenuated during the maintenance of symbiotic relationships. Finally, proteomic changes occurring during the early life stages of marine organisms emphasize the importance of signaling events during development in a rapidly changing environment. Changes in p...

Rare earth element geochemistry of hydrothermal deposits from the active TAG Mound, 26°N Mid-Atlantic Ridge

Abstract: The rare earth element (REE) geochemistry of various phases from the active TAG hydrothermal mound has been examined and related to their mineralogy and fluid chemistry. The mound deposits range from black and white smoker chimneys, massive anhydrite/sulphide mixtures, oxides, and ochres. All phases, except black smoker chimney anhydrite, demonstrate a positive Eu anomaly when normalised to chondrite REE values. REE substitution into sulphide and sulphate phases appears to be strongly influenced by crystallographic control for all REE other than Eu. Precipitation of anhydrite within the TAG mound is the major mechanism for removal of REE during mound circulation and 0.15-0.35 g anhydrite is inferred to precipitate from every kg of fluid venting from the white smoker chimneys. Oxides from the mound fall into three different categories with distinct REE patterns: oxide rims on sulphides, atacamite-bearing oxides, and silica-rich Fe-oxides and ochres. The oxide rim phases contain sulphide and seawater derived REEs whereas the atacamite-bearing oxides and the ochreous material exhibit no seawater signature which suggests precipitation from, or alteration by, a modified hydrothermal fluid.

Applications of Carboxylesterase Activity in Environmental Monitoring and Toxicity Identification Evaluations (TIEs)

Abstract: This review has examined a number of issues surrounding the use of carboxylesterase activity in environmental monitoring. It is clear that carboxylesterases are important enzymes that deserve increased study. This class of enzymes appears to have promise for employment in environmental monitoring with a number of organisms and testing scenarios, and it is appropriate for inclusion in standard monitoring assays. Given the ease of most activity assays, it is logical to report carboxylesterase activity levels as well as other esterases (e.g., acetylcholinesterase). Although it is still unclear as to whether acetylcholinesterase or carboxylesterase is the most "appropriate" biomarker, there are sufficient data to suggest that at the very least further studies should be performed with carboxylesterases. Most likely, data will show that it is optimal to measure activity for both enzymes whenever possible. Acetylcholinesterase has the distinct advantage of a clear biological function, whereas the endogenous role of carboxylesterases is still unclear. However, a combination of activity measurements for the two enzyme systems will provide a much more detailed picture of organism health and insecticide exposure. The main outstanding issues are the choice of substrate for activity assays and which tissues/organisms are most appropriate for monitoring studies. Substrate choice is very important, because carboxylesterase activity consists of multiple isozymes that most likely fluctuate on an organism- and tissue-specific basis. It is therefore difficult to compare work in one organism with a specific substrate with work performed in a different organism with a different substrate. An attempt should therefore be made to standardize the method. The most logical choice is PNPA (p-nitrophenyl acetate), as this substrate is commercially available, requires inexpensive optics for assay measurements, and has been used extensively in the literature. However, none of these beneficial properties indicates that the substrate is an appropriate surrogate for a specific compound, e.g., pyrethroid-hydrolyzing activity. It will most likely be necessary to have more specific surrogate substrates for use in assays that require information on the ability to detoxify/hydrolyze specific environmental contaminants. The use of carboxylesterase activity in TIE protocols appears to have excellent promise, but there are further technical issues that should be addressed to increase the utility of the method. The main concerns include the large amount of nonspecific protein added to the testing system, which can lead to undesirable side effects including nonspecific reductions in observed toxicity, decrease in dissolved oxygen content, and organism growth. It is probable that these issues can be resolved with further assay development. The ideal solution would be to have a commercial recombinant carboxylesterase that possessed elevated pyrethroid-hydrolysis activity and which was readily available, homogeneous, and inexpensive. The availability of such an enzyme would address nearly all the current method shortcomings. Such a preparation would be extremely useful for the aquatic toxicology community. Further work should focus on screening available esterases for stability, cost, and activity on pyrethroids, with specific focus on esterases capable of distinguishing type I from type II pyrethroids. It would also be beneficial to identify esterases that are not sensitive to OP insecticides. Many esterases and lipases are available as sets to test chemical reactions for green chemistry, enabling large-scale screening. Other potential approaches to increase the utility of the enzyme include derivatization with polyethylene glycol (PEG) or cyanuric acid chloride to increase stability and reduce microbial degradation. It is also possible that the enzyme could be formulated in a sol gel preparation to increase stability. It is likely that the use of carboxylesterase addition will increase for applications in sediment TIEs. Carboxylesterases are an interesting and useful enzyme family that deserves further study for applications in environmental monitoring as well as to increase our understanding of the fundamental biological role(s) of these enzymes. There are, of course, other enzymes that show high esterase activity on pyrethroids but are not technically carboxylesterases in the alpha/beta-hydrolase fold protein family. These enzymes should also be examined for use in TIE protocols and "esterase" arrays as well as for general applications in environmental monitoring. One can envision the creation of a standardized screen of enzymes with esterase activity to (1) identify environmental contaminants, (2) estimate the potential toxic effects of new compounds on a range of organisms, and (3) monitor organism exposure to agrochemicals (and potentially other contaminants). This approach would provide a multibiomarker integrative assessment of esterase-inhibiting potential of a compound or mixture. In conclusion, much is still unknown about this enzyme family, indicating that this area is still wide open to researchers interested in the applications of carboxylesterase activity as well as basic biological questions into the nature of enzyme activity and the endogenous role of the enzyme.

Marine Biocatalysts: Enzymatic Features and Applications

Abstract: In several recent reports related to biocatalysis the enormous pool of biodiversity found in marine ecosystems is considered a profitable natural reservoir for acquiring an inventory of useful biocatalysts. These enzymes are characterized by well-known habitat-related features such as salt tolerance, hyperthermostability, barophilicity and cold adaptivity. In addition, their novel chemical and stereochemical characteristics increase the interest of biocatalysis practitioners both in academia and research industry. In this review, starting from the analysis of these featuring habitat-related properties, important examples of marine enzymes in biocatalysis will be reported. Completion of this report is devoted to the analysis of novel chemical and stereochemical biodiversity offered by marine biocatalysts with particular emphasis on current or potential applications of these enzymes in chemical and pharmaceutical fields. The analysis of literature cited here and the many published patent applications concerning the use of marine enzymes supports the view that these biocatalysts are just waiting to be discovered, reflecting the importance of the marine environment. The potential of this habitat should be thoroughly explored and possibly the way to access useful biocatalysts should avoid destructive large-scale collections of marine biomass for enzyme production. These two aspects are day by day increasing in interest and a future increase in the use of marine enzymes in biocatalysis should be expected.