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Elizabeth K. Costello
Researcher at Stanford University
Publications - 54
Citations - 45602
Elizabeth K. Costello is an academic researcher from Stanford University. The author has contributed to research in topics: Population & Gut flora. The author has an hindex of 33, co-authored 48 publications receiving 38406 citations. Previous affiliations of Elizabeth K. Costello include University of Colorado Boulder & Veterans Health Administration.
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Journal ArticleDOI
QIIME allows analysis of high-throughput community sequencing data.
J. Gregory Caporaso,Justin Kuczynski,Jesse Stombaugh,Kyle Bittinger,Frederic D. Bushman,Elizabeth K. Costello,Noah Fierer,Antonio Gonzalez Peña,Julia K. Goodrich,Jeffrey I. Gordon,Gavin A. Huttley,Scott T. Kelley,Dan Knights,Jeremy E. Koenig,Ruth E. Ley,Catherine A. Lozupone,Daniel McDonald,Brian D. Muegge,Meg Pirrung,Jens Reeder,Joel Sevinsky,Peter J. Turnbaugh,William A. Walters,Jeremy Widmann,Tanya Yatsunenko,Jesse R. Zaneveld,Rob Knight,Rob Knight +27 more
TL;DR: An overview of the analysis pipeline and links to raw data and processed output from the runs with and without denoising are provided.
Journal ArticleDOI
Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns
Maria Gloria Dominguez-Bello,Elizabeth K. Costello,Elizabeth K. Costello,Monica Contreras,Magda Magris,Glida Hidalgo,Noah Fierer,Rob Knight +7 more
TL;DR: It is found that in direct contrast to the highly differentiated communities of their mothers, neonates harbored bacterial communities that were undifferentiated across multiple body habitats, regardless of delivery mode.
Journal ArticleDOI
Bacterial Community Variation in Human Body Habitats Across Space and Time
Elizabeth K. Costello,Christian L. Lauber,Micah Hamady,Noah Fierer,Noah Fierer,Jeffrey I. Gordon,Rob Knight,Rob Knight +7 more
TL;DR: The results indicate that the microbiota, although personalized, varies systematically across body habitats and time; such trends may ultimately reveal how microbiome changes cause or prevent disease.
Journal ArticleDOI
The Application of Ecological Theory Toward an Understanding of the Human Microbiome
Elizabeth K. Costello,Keaton Stagaman,Les Dethlefsen,Brendan J. M. Bohannan,David A. Relman,David A. Relman +5 more
TL;DR: This work explores three core scenarios of human microbiome assembly: development in infants, representing assembly in previously unoccupied habitats; recovery from antibiotics, representingassembly after disturbance; and invasion by pathogens, representingAssembly in the context of invasive species.
Journal ArticleDOI
Moving pictures of the human microbiome.
J. Gregory Caporaso,Christian L. Lauber,Elizabeth K. Costello,Donna Berg-Lyons,Antonio Gonzalez,Jesse Stombaugh,Dan Knights,Pawel Gajer,Jacques Ravel,Noah Fierer,Noah Fierer,Jeffrey I. Gordon,Rob Knight,Rob Knight +13 more
TL;DR: The largest human microbiota time series analysis to date is presented, covering two individuals at four body sites over 396 timepoints and finds that despite stable differences between body sites and individuals, there is pronounced variability in an individual's microbiota across months, weeks and even days.