E
Ellen J. Pritham
Researcher at University of Utah
Publications - 33
Citations - 6674
Ellen J. Pritham is an academic researcher from University of Utah. The author has contributed to research in topics: Genome & Transposable element. The author has an hindex of 25, co-authored 32 publications receiving 5941 citations. Previous affiliations of Ellen J. Pritham include University of Georgia & University of Texas at Arlington.
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Journal ArticleDOI
Genome sequencing and analysis of the model grass Brachypodium distachyon
John P. Vogel,David F. Garvin,Todd C. Mockler,Jeremy Schmutz,Daniel S. Rokhsar,Michael W. Bevan,Kerrie Barry,Susan Lucas,Miranda Harmon-Smith,Kathleen Lail,Hope Tice,Jane Grimwood,Neil McKenzie,Naxin Huo,Yong Q. Gu,Gerard R. Lazo,Olin D. Anderson,Frank M. You,Ming-Cheng Luo,Jan Dvorak,Jonathan M. Wright,Melanie Febrer,Dominika Idziak,Robert Hasterok,Erika Lindquist,Mei Wang,Samuel E. Fox,Henry D. Priest,Sergei A. Filichkin,Scott A. Givan,Douglas W. Bryant,Jeff H. Chang,Haiyan Wu,Wei Wu,An-Ping Hsia,Patrick S. Schnable,Anantharaman Kalyanaraman,Brad Barbazuk,Todd P. Michael,Samuel P. Hazen,Jennifer N. Bragg,Debbie Laudencia-Chingcuanco,Yiqun Weng,Georg Haberer,Manuel Spannagl,Klaus F. X. Mayer,Thomas Rattei,Therese Mitros,Sang-Jik Lee,Jocelyn K. C. Rose,Lukas A. Mueller,Thomas L. York,Thomas Wicker,Jan P. Buchmann,Jaakko Tanskanen,Alan H. Schulman,Heidrun Gundlach,Michael W. Bevan,Antonio Costa de Oliveira,Luciano da C. Maia,William R. Belknap,Ning Jiang,Jinsheng Lai,Liucun Zhu,Jianxin Ma,Cheng Sun,Ellen J. Pritham,Jérôme Salse,Florent Murat,Michael Abrouk,Rémy Bruggmann,Joachim Messing,Noah Fahlgren,Christopher M. Sullivan,James C. Carrington,Elisabeth J. Chapman,Greg D. May,Jixian Zhai,Matthias Ganssmann,Sai Guna Ranjan Gurazada,Marcelo A German,Blake C. Meyers,Pamela J. Green,Ludmila Tyler,Jiajie Wu,James A. Thomson,Shan Chen,Henrik Vibe Scheller,Jesper Harholt,Peter Ulvskov,Jeffrey A. Kimbrel,Laura E. Bartley,Peijian Cao,Ki-Hong Jung,Manoj Sharma,Miguel E. Vega-Sánchez,Pamela C. Ronald,Chris Dardick,Stefanie De Bodt,Wim Verelst,Dirk Inzé,Maren Heese,Arp Schnittger,Xiaohan Yang,Udaya C. Kalluri,Gerald A. Tuskan,Zhihua Hua,Richard D. Vierstra,Yu Cui,Shuhong Ouyang,Qixin Sun,Zhiyong Liu,Alper Yilmaz,Erich Grotewold,Richard Sibout,Kian Hématy,Grégory Mouille,Herman Höfte,Todd P. Michael,Jérôme Pelloux,Devin O'Connor,James C. Schnable,Scott C. Rowe,Frank G. Harmon,Cynthia L. Cass,John C. Sedbrook,Mary E. Byrne,Sean Walsh,Janet Higgins,Pinghua Li,Thomas P. Brutnell,Turgay Unver,Hikmet Budak,Harry Belcram,Mathieu Charles,Boulos Chalhoub,Ivan Baxter +136 more
TL;DR: The high-quality genome sequence will help Brachypodium reach its potential as an important model system for developing new energy and food crops and establishes a template for analysis of the large genomes of economically important pooid grasses such as wheat.
Journal ArticleDOI
The ecoresponsive genome of Daphnia pulex
John K. Colbourne,Michael E. Pfrender,Michael E. Pfrender,Donald L. Gilbert,W. Kelley Thomas,Abraham E. Tucker,Abraham E. Tucker,Todd H. Oakley,Shin-ichi Tokishita,Andrea Aerts,Georg J. Arnold,Malay Kumar Basu,Malay Kumar Basu,Darren J Bauer,Carla E. Cáceres,Liran Carmel,Liran Carmel,Claudio Casola,Jeong Hyeon Choi,John C. Detter,Qunfeng Dong,Qunfeng Dong,Serge Dusheyko,Brian D. Eads,Thomas Fröhlich,Kerry Geiler-Samerotte,Kerry Geiler-Samerotte,Daniel Gerlach,Daniel Gerlach,Phil Hatcher,Sanjuro Jogdeo,Sanjuro Jogdeo,Jeroen Krijgsveld,Evgenia V. Kriventseva,Dietmar Kültz,Christian Laforsch,Erika Lindquist,Jacqueline Lopez,J. Robert Manak,J. Robert Manak,Jean Muller,Jasmyn Pangilinan,Rupali P Patwardhan,Rupali P Patwardhan,Samuel Pitluck,Ellen J. Pritham,Andreas Rechtsteiner,Andreas Rechtsteiner,Mina Rho,Igor B. Rogozin,Onur Sakarya,Onur Sakarya,Asaf Salamov,Sarah Schaack,Sarah Schaack,Harris Shapiro,Yasuhiro Shiga,Courtney Skalitzky,Zachary Smith,Alexander Souvorov,Way Sung,Zuojian Tang,Zuojian Tang,Dai Tsuchiya,Hank Tu,Hank Tu,Harmjan R. Vos,Mei Wang,Yuri I. Wolf,Hideo Yamagata,Takuji Yamada,Yuzhen Ye,Joseph R. Shaw,Justen Andrews,Teresa J. Crease,Haixu Tang,Susan Lucas,Hugh M. Robertson,Peer Bork,Eugene V. Koonin,Evgeny M. Zdobnov,Evgeny M. Zdobnov,Igor V. Grigoriev,Michael Lynch,Jeffrey L. Boore,Jeffrey L. Boore +85 more
TL;DR: The Daphnia genome reveals a multitude of genes and shows adaptation through gene family expansions, and the coexpansion of gene families interacting within metabolic pathways suggests that the maintenance of duplicated genes is not random.
Journal ArticleDOI
DNA Transposons and the Evolution of Eukaryotic Genomes
TL;DR: This review focuses on DNA-mediated or class 2 transposons and emphasizes how this class of elements is distinguished from other types of mobile elements in terms of their structure, amplification dynamics, and genomic effect.
Journal ArticleDOI
Sequencing of Culex quinquefasciatus Establishes a Platform for Mosquito Comparative Genomics
Peter Arensburger,Karyn Megy,Robert M. Waterhouse,Robert M. Waterhouse,Jenica L. Abrudan,Paolo Amedeo,Beatriz García Antelo,Lyric C. Bartholomay,Shelby L. Bidwell,Elisabet Caler,Francisco Camara,Corey L. Campbell,Kathryn S. Campbell,Claudio Casola,Marta T Castro,Ishwar Chandramouliswaran,Sinéad B. Chapman,Scott Christley,Javier Costas,Eric Eisenstadt,Cédric Feschotte,Claire M. Fraser-Liggett,Roderic Guigó,Brian J. Haas,Martin Hammond,Bill S. Hansson,Janet Hemingway,Sharon R. Hill,Clint Howarth,Rickard Ignell,Ryan C. Kennedy,Chinnappa D. Kodira,Neil F. Lobo,Chunhong Mao,George F. Mayhew,Kristin Michel,Akio Mori,Nannan Liu,Horacio Naveira,Vishvanath Nene,Vishvanath Nene,Nam P. Nguyen,Matthew D. Pearson,Ellen J. Pritham,Daniela Puiu,Yumin Qi,Hilary Ranson,José M. C. Ribeiro,Hugh M Roberston,David W. Severson,Martin Shumway,Mario Stanke,Robert L. Strausberg,Cheng Sun,Granger G. Sutton,Zhijian Jake Tu,Jose M. C. Tubio,Maria F. Unger,Dana L. Vanlandingham,Albert J. Vilella,Owen White,Jared White,Charles S. Wondji,Jennifer R. Wortman,Evgeny M. Zdobnov,Evgeny M. Zdobnov,Evgeny M. Zdobnov,Bruce W. Birren,Bruce M. Christensen,Frank H. Collins,Anthony J. Cornel,George Dimopoulos,Linda Hannick,Stephen Higgs,Gregory C. Lanzaro,Daniel Lawson,Norman H. Lee,Marc A. T. Muskavitch,Marc A. T. Muskavitch,Marc A. T. Muskavitch,Alexander S. Raikhel,Peter W. Atkinson +81 more
TL;DR: The genomic sequence of C. quinquefasciatus is described, which reveals distinctions related to vector capacities and habitat preferences, and confirmed that inoculation with unfamiliar bacteria prompted strong immune responses in Culex.
Journal ArticleDOI
Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs.
Bruce A. Curtis,Goro Tanifuji,Goro Tanifuji,Fabien Burki,Ansgar Gruber,Ansgar Gruber,Manuel Irimia,Shinichiro Maruyama,Shinichiro Maruyama,Maria Cecilia Arias,Steven G. Ball,Gillian H. Gile,Gillian H. Gile,Yoshihisa Hirakawa,Julia F. Hopkins,Julia F. Hopkins,Alan Kuo,Stefan A. Rensing,Stefan A. Rensing,Jeremy Schmutz,Aikaterini Symeonidi,Marek Eliáš,Robert J.M. Eveleigh,Emily K. Herman,Mary J. Klute,Takuro Nakayama,Takuro Nakayama,Miroslav Oborník,Miroslav Oborník,Adrian Reyes-Prieto,Adrian Reyes-Prieto,E. Virginia Armbrust,Stephen J. Aves,Robert G. Beiko,Pedro M. Coutinho,Joel B. Dacks,Dion G. Durnford,Naomi M. Fast,Beverley R. Green,Cameron J. Grisdale,Franziska Hempel,Bernard Henrissat,Marc P. Höppner,Ken-ichiro Ishida,Eunsoo Kim,Luděk Kořený,Luděk Kořený,Peter G. Kroth,Yuan Liu,Yuan Liu,Shehre-Banoo Malik,Shehre-Banoo Malik,Uwe G. Maier,Darcy L. McRose,Thomas Mock,Jonathan A. D. Neilson,Naoko T. Onodera,Naoko T. Onodera,Anthony M. Poole,Ellen J. Pritham,Thomas A. Richards,Gabrielle Rocap,Scott William Roy,Chihiro Sarai,Sarah Schaack,Shu Shirato,Claudio H. Slamovits,Claudio H. Slamovits,David F. Spencer,David F. Spencer,Shigekatsu Suzuki,Alexandra Z. Worden,Stefan Zauner,Kerrie Barry,Callum J. Bell,Arvind K. Bharti,John A. Crow,Jane Grimwood,Robin Kramer,Erika Lindquist,Susan Lucas,Asaf Salamov,Geoffrey I. McFadden,Christopher E. Lane,Patrick J. Keeling,Michael W. Gray,Michael W. Gray,Igor V. Grigoriev,John M. Archibald,John M. Archibald +89 more
TL;DR: The nuclear genomes of the cryptophyte Guillardia theta and the chlorarachniophyte Bigelowiella natans are sequenced and extensive genetic and biochemical mosaicism is revealed, with both host- and endosymbiont-derived genes servicing the mitochondrion, the host cell cytosol, the plastid and the remnant endosYmbionT cytOSol of both algae.