Erdogan Gulari

Bio: Erdogan Gulari is an academic researcher from University of Michigan. The author has contributed to research in topics: Catalysis & Thin film. The author has an hindex of 53, co-authored 221 publications receiving 9838 citations. Previous affiliations of Erdogan Gulari include Chulalongkorn University & Office of Technology Transfer.

Accurate multiplex gene synthesis from programmable DNA microchips

Abstract: Testing the many hypotheses from genomics and systems biology experiments demands accurate and cost-effective gene and genome synthesis. Here we describe a microchip-based technology for multiplex gene synthesis. Pools of thousands of ‘construction’ oligonucleotides and tagged complementary ‘selection’ oligonucleotides are synthesized on photo-programmable microfluidic chips1, released, amplified and selected by hybridization to reduce synthesis errors ninefold. A one-step polymerase assembly multiplexing reaction assembles these into multiple genes. This technology enabled us to synthesize all 21 genes that encode the proteins of the Escherichia coli 30S ribosomal subunit, and to optimize their translation efficiency in vitro through alteration of codon bias. This is a significant step towards the synthesis of ribosomes in vitro and should have utility for synthetic biology in general.

OligoArray 2.0: design of oligonucleotide probes for DNA microarrays using a thermodynamic approach

Abstract: There is a substantial interest in implementing bioinformatics technologies that allow the design of oligonucleotides to support the development of microarrays made from short synthetic DNA fragments spotted or in situ synthesized on slides. Ideally, such oligonucleotides should be totally specific to their respective targets to avoid any cross-hybridization and should not form stable secondary structures that may interfere with the labeled probes during hybridization. We have developed OligoArray 2.0, a program that designs specific oligonucleotides at the genomic scale. It uses a thermodynamic approach to predict secondary structures and to calculate the specificity of targets on chips for a unique probe in a mixture of labeled probes. Furthermore, OligoArray 2.0 can adjust the oligonucleotide length, according to user input, to fit a narrow T(m) range compatible with hybridization requirements. Combined with on chip oligonucleotide synthesis, this program makes it feasible to perform expression analysis on a genomic scale for any organism for which the genome sequence is known. This is without relying on cDNA or oligonucleotide libraries. OligoArray 2.0 was used to design 75 764 oligonucleotides representing 26 140 transcripts from Arabidopsis thaliana. Among this set, we provide at least one specific oligonucleotide for 93% of these transcripts.

Selective CO oxidation over Pt/alumina catalysts for fuel cell applications

Abstract: It has been demonstrated that even traces of CO present in the hydrogen rich feed gas to proton exchange membrane (PEM) fuel cells can poison the platinum anode electrode and dramatically reduce the power output. The tolerable level of CO is around 10 ppm. In this paper, we present the results of selective CO oxidation in simulated reformate gas over single-step sol–gel prepared Pt/alumina catalysts. The effect of water vapor, carbon dioxide, CO and oxygen concentrations, temperature, and Pt loading on the activity and selectivity are presented. Our results show that a 2% Pt/alumina sol–gel catalyst can selectively oxidize CO down to a few ppm with constant selectivity and high space velocity. Water vapor in the feed increases the activity of the catalysts dramatically and in the absence of water vapor, CO 2 in the feed stream decreases the activity of the catalysts significantly. © 2002 Elsevier Science B.V. All rights reserved.

Optical properties of silicon nitride films deposited by hot filament chemical vapor deposition

Abstract: Silicon nitride films were deposited at low temperatures (245–370 °C) and high deposition rates (500–1700 A/min) by hot filament assisted chemical vapor deposition (HFCVD). Optical properties of these amorphous silicon nitride thin films have been extensively characterized by absorption, photoluminescence (PL), photoluminescence excitation, and electroluminescence measurements. The optical band gap of the films was varied between 2.43 and 4.74 eV by adjusting the flow rate of the disilane source gas. Three broad peaks at 1.8, 2.4, and 3.0 eV were observed in the PL spectra from these films. A simple qualitative model based on nitrogen and silicon dangling bonds adequately explains the observed PL features. The photoluminescence intensity observed in these films was 8–10 times stronger than films deposited by plasma enhanced chemical vapor deposition, under similar conditions. The high deposition rates obtained by HFCVD is believed to introduce a large number of these optically active defects.

Dynamics of Growth of Silica Particles from Ammonia-Catalyzed Hydrolysis of Tetra-ethyl-orthosilicate

Abstract: The NH3-catalyzed formation of colloidal silica particles from tetra-ethyl-orthosilicate (TEOS) in methanol and ethanol is studied by means of light scattering and Raman spectroscopy. We find that the growth is characterized by an incubation period after which no significant nucleation takes place. The particles have uniform, non-fractal structure and show low polydispersity. In the presence of excess water, the rate-limiting step is the hydrolysis, which is a first-order process in the orthosilicate concentration. © 1988 Academic Press, Inc.

I and i

Abstract: There is, I think, something ethereal about i —the square root of minus one. I remember first hearing about it at school. It seemed an odd beast at that time—an intruder hovering on the edge of reality. Usually familiarity dulls this sense of the bizarre, but in the case of i it was the reverse: over the years the sense of its surreal nature intensified. It seemed that it was impossible to write mathematics that described the real world in …

疟原虫var基因转换速率变化导致抗原变异[英]／Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A

Abstract: 抗原变异可使得多种致病微生物易于逃避宿主免疫应答。表达在感染红细胞表面的恶性疟原虫红细胞表面蛋白1（PfPMP1）与感染红细胞、内皮细胞、树突状细胞以及胎盘的单个或多个受体作用，在黏附及免疫逃避中起关键的作用。每个单倍体基因组var基因家族编码约60种成员，通过启动转录不同的var基因变异体为抗原变异提供了分子基础。

Recent advances in the liquid-phase syntheses of inorganic nanoparticles.

Abstract: The development of novel materials is a fundamental focal point of chemical research; and this interest is mandated by advancements in all areas of industry and technology. A good example of the synergism between scientific discovery and technological development is the electronics industry, where discoveries of new semiconducting materials resulted in the evolution from vacuum tubes to diodes and transistors, and eventually to miniature chips. The progression of this technology led to the development * To whom correspondence should be addressed. B.L.C.: (504) 2801385 (phone); (504) 280-3185 (fax); bcushing@uno.edu (e-mail). C.J.O.: (504)280-6846(phone);(504)280-3185(fax);coconnor@uno.edu (e-mail). 3893 Chem. Rev. 2004, 104, 3893−3946