Ernest R. Davidson

Bio: Ernest R. Davidson is an academic researcher from University of Washington. The author has contributed to research in topics: Configuration interaction & Ab initio. The author has an hindex of 78, co-authored 480 publications receiving 30616 citations. Previous affiliations of Ernest R. Davidson include Lawrence Livermore National Laboratory & Indiana University.

Studies in Configuration Interaction: The First-Row Diatomic Hydrides

Abstract: Molecular properties of the first-row diatomic hydrides, calculated with accurate configuration-interaction wave functions, are presented Ground-state functions, constructed from approximate natural orbitals, were determined at the equilibrium internuclear separation for each molecule The basis sets used, were capable of reproducing recently published self-consistent-field energies to within 0003 hartrees A minimum of 70% of the correlation energy and an error in the dipole moment of less than 3% were obtained in a systematic study of each molecule To attain this accuracy, large numbers of singly and doubly excited configurations were used in the wave functions

Ground-state correlation energies for two- to ten-electron atomic ions.

Abstract: Improved estimates of the nonrelativistic stationary nucleus correlation energies of the ground-state atomic ions with three to ten electrons and Z up to 20 are derived by combining experimental data and improved ab initio calculations. Unlike previous work in this area, we focus on the correlation contribution to individual ionization energies, computed by comparing experimental data with relativistic complete-valence-space Hartree-Fock energies.

Electronic Population Analysis of Molecular Wavefunctions

Abstract: A general method for carrying out population analysis of wavefunctions calculated with arbitrary basis sets is presented. The difficulties in defining orbital populations is discussed. Results are presented for the sequence BF, CO, and N2 which indicate that back‐transfer of charge in the π bond cancels the normal transfer of the charge in the σ bond. Contrary to popular belief, the more electronegative element has the larger degree of hybridization in each case. The amount of promotion of 2s electrons is greater on the less‐electronegative element, as expected.

A test of the Hirshfeld definition of atomic charges and moments

Abstract: The Hirshfeld population analysis scheme which carves the molecular density into atomic density contributions is tested. This method does not require a reference to basis sets or their respective locations, but is based on a different physical and mathematical footing. The advantage of this method is that, when the molecular deformation density converges to the true solution, the computed net charges will necessarily converge. This method also allows a straightforward definition for “local” moments. About 36 molecules have been used to compute the conventional Mulliken and Lowdin population analyses with STO3G, 6311G** and Dunning-Hay split valence basis sets. These results have been compared to the estimates provided by the Hirshfeld model. The charges found in the Hirshfeld method are smaller than those from the other methods.

Gaussian basis sets for use in correlated molecular calculations. I. The atoms boron through neon and hydrogen

Abstract: In the past, basis sets for use in correlated molecular calculations have largely been taken from single configuration calculations. Recently, Almlof, Taylor, and co‐workers have found that basis sets of natural orbitals derived from correlated atomic calculations (ANOs) provide an excellent description of molecular correlation effects. We report here a careful study of correlation effects in the oxygen atom, establishing that compact sets of primitive Gaussian functions effectively and efficiently describe correlation effects i f the exponents of the functions are optimized in atomic correlated calculations, although the primitive (s p) functions for describing correlation effects can be taken from atomic Hartree–Fock calculations i f the appropriate primitive set is used. Test calculations on oxygen‐containing molecules indicate that these primitive basis sets describe molecular correlation effects as well as the ANO sets of Almlof and Taylor. Guided by the calculations on oxygen, basis sets for use in correlated atomic and molecular calculations were developed for all of the first row atoms from boron through neon and for hydrogen. As in the oxygen atom calculations, it was found that the incremental energy lowerings due to the addition of correlating functions fall into distinct groups. This leads to the concept of c o r r e l a t i o n c o n s i s t e n t b a s i s s e t s, i.e., sets which include all functions in a given group as well as all functions in any higher groups. Correlation consistent sets are given for all of the atoms considered. The most accurate sets determined in this way, [5s4p3d2f1g], consistently yield 99% of the correlation energy obtained with the corresponding ANO sets, even though the latter contains 50% more primitive functions and twice as many primitive polarization functions. It is estimated that this set yields 94%–97% of the total (HF+1+2) correlation energy for the atoms neon through boron.

The M06 suite of density functionals for main group thermochemistry, thermochemical kinetics, noncovalent interactions, excited states, and transition elements: two new functionals and systematic testing of four M06-class functionals and 12 other functionals

Abstract: We present two new hybrid meta exchange- correlation functionals, called M06 and M06-2X. The M06 functional is parametrized including both transition metals and nonmetals, whereas the M06-2X functional is a high-nonlocality functional with double the amount of nonlocal exchange (2X), and it is parametrized only for nonmetals.The functionals, along with the previously published M06-L local functional and the M06-HF full-Hartree–Fock functionals, constitute the M06 suite of complementary functionals. We assess these four functionals by comparing their performance to that of 12 other functionals and Hartree–Fock theory for 403 energetic data in 29 diverse databases, including ten databases for thermochemistry, four databases for kinetics, eight databases for noncovalent interactions, three databases for transition metal bonding, one database for metal atom excitation energies, and three databases for molecular excitation energies. We also illustrate the performance of these 17 methods for three databases containing 40 bond lengths and for databases containing 38 vibrational frequencies and 15 vibrational zero point energies. We recommend the M06-2X functional for applications involving main-group thermochemistry, kinetics, noncovalent interactions, and electronic excitation energies to valence and Rydberg states. We recommend the M06 functional for application in organometallic and inorganometallic chemistry and for noncovalent interactions.

疟原虫var基因转换速率变化导致抗原变异[英]／Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A

Abstract: 抗原变异可使得多种致病微生物易于逃避宿主免疫应答。表达在感染红细胞表面的恶性疟原虫红细胞表面蛋白1（PfPMP1）与感染红细胞、内皮细胞、树突状细胞以及胎盘的单个或多个受体作用，在黏附及免疫逃避中起关键的作用。每个单倍体基因组var基因家族编码约60种成员，通过启动转录不同的var基因变异体为抗原变异提供了分子基础。

General atomic and molecular electronic structure system

Abstract: A description of the ab initio quantum chemistry package GAMESS is presented. Chemical systems containing atoms through radon can be treated with wave functions ranging from the simplest closed-shell case up to a general MCSCF case, permitting calculations at the necessary level of sophistication. Emphasis is given to novel features of the program. The parallelization strategy used in the RHF, ROHF, UHF, and GVB sections of the program is described, and detailed speecup results are given. Parallel calculations can be run on ordinary workstations as well as dedicated parallel machines. © John Wiley & Sons, Inc.