Ernest R. Davidson

Bio: Ernest R. Davidson is an academic researcher from University of Washington. The author has contributed to research in topics: Configuration interaction & Ab initio. The author has an hindex of 78, co-authored 480 publications receiving 30616 citations. Previous affiliations of Ernest R. Davidson include Lawrence Livermore National Laboratory & Indiana University.

Theoretical Study of the BeH Molecule

Abstract: An iterative procedure, involving the use of an elliptical basis set, natural orbitals, “pair equations,” and consecutive use of the perturbation and variation methods, was used to calculate the ground‐state energy of the BeH molecule—the 2Σ state. The energy with the best 50‐configuration wavefunction, at the experimental internuclear separation of 2.5380 a.u., was found to be −15.221 a.u. (experimental = −15.254 a.u.), corresponding to 65% of the experimental dissociation energy. A dipole moment of −0.07 a.u. (−0.18 D) was obtained. Population analysis of the molecular wavefunctions was done to investigate the nature of the chemical bond involved. Less complex calculations involving configuration interaction were also done for the low‐lying excited states at nine different internuclear separations. Potential energy curves were plotted. The transition energy obtained (2Π→2Σ) was found to be within 1.3% of the experimental value. Transition probabilities were also considered.

Ab initio calculations on urea

Abstract: Multiconfiguration wave functions constructed from contracted Gaussian-lobe functions have been found for the ground and valence-excited states of urea. ICSCF molecular orbitals of the excited states were used as the parent configurations for the CI calculations except for the 1A1(π π*) state. The 1A1(π π*) state used as its parent configuration an orthogonal linear combination of natural orbitals obtained from the second root of a three-configuration SCF calculation. The lowest excited states are predicted to be the n π π* and π π* triplet states. The lowest singlet state is predicted to be the n π π* state with an energy in good agreement with the one known UV band at 7.2 eV. The π π* singlet state is predicted to be about 1.9 eV higher, contrary to several previous assignments which assumed the lowest band was a π π* amide resonance band. The predicted ionization energy of 9.0 eV makes this and higher states autoionizing.

Necessary conditions for the N-representability of pair distribution functions

Abstract: A necessary condition for the N-representability of the electron pair density proposed by one of the authors (E. R. D.) is generalized. This shows a link between this necessary condition and other, more widely known, N-representability conditions for the second-order density matrix. The extension to spin-resolved electron pair densities is considered, as is the extension to higher-order distribution functions. Although quantum mechanical systems are our primary focus, the results are also applicable to classical systems, where they reduce to an inequality originally derived by Garrod and Percus. As a simple application, bounds to the average angle between an electron pair are derived. It is shown that computational methods based on variational minimization of the energy with respect to the electron pair density can give extremely poor results unless robust N-representability constraints are considered. For reference, constraints for the N-representability of the pair density are summarized. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem, 2006

Gaussian basis sets for use in correlated molecular calculations. I. The atoms boron through neon and hydrogen

Abstract: In the past, basis sets for use in correlated molecular calculations have largely been taken from single configuration calculations. Recently, Almlof, Taylor, and co‐workers have found that basis sets of natural orbitals derived from correlated atomic calculations (ANOs) provide an excellent description of molecular correlation effects. We report here a careful study of correlation effects in the oxygen atom, establishing that compact sets of primitive Gaussian functions effectively and efficiently describe correlation effects i f the exponents of the functions are optimized in atomic correlated calculations, although the primitive (s p) functions for describing correlation effects can be taken from atomic Hartree–Fock calculations i f the appropriate primitive set is used. Test calculations on oxygen‐containing molecules indicate that these primitive basis sets describe molecular correlation effects as well as the ANO sets of Almlof and Taylor. Guided by the calculations on oxygen, basis sets for use in correlated atomic and molecular calculations were developed for all of the first row atoms from boron through neon and for hydrogen. As in the oxygen atom calculations, it was found that the incremental energy lowerings due to the addition of correlating functions fall into distinct groups. This leads to the concept of c o r r e l a t i o n c o n s i s t e n t b a s i s s e t s, i.e., sets which include all functions in a given group as well as all functions in any higher groups. Correlation consistent sets are given for all of the atoms considered. The most accurate sets determined in this way, [5s4p3d2f1g], consistently yield 99% of the correlation energy obtained with the corresponding ANO sets, even though the latter contains 50% more primitive functions and twice as many primitive polarization functions. It is estimated that this set yields 94%–97% of the total (HF+1+2) correlation energy for the atoms neon through boron.

The M06 suite of density functionals for main group thermochemistry, thermochemical kinetics, noncovalent interactions, excited states, and transition elements: two new functionals and systematic testing of four M06-class functionals and 12 other functionals

Abstract: We present two new hybrid meta exchange- correlation functionals, called M06 and M06-2X. The M06 functional is parametrized including both transition metals and nonmetals, whereas the M06-2X functional is a high-nonlocality functional with double the amount of nonlocal exchange (2X), and it is parametrized only for nonmetals.The functionals, along with the previously published M06-L local functional and the M06-HF full-Hartree–Fock functionals, constitute the M06 suite of complementary functionals. We assess these four functionals by comparing their performance to that of 12 other functionals and Hartree–Fock theory for 403 energetic data in 29 diverse databases, including ten databases for thermochemistry, four databases for kinetics, eight databases for noncovalent interactions, three databases for transition metal bonding, one database for metal atom excitation energies, and three databases for molecular excitation energies. We also illustrate the performance of these 17 methods for three databases containing 40 bond lengths and for databases containing 38 vibrational frequencies and 15 vibrational zero point energies. We recommend the M06-2X functional for applications involving main-group thermochemistry, kinetics, noncovalent interactions, and electronic excitation energies to valence and Rydberg states. We recommend the M06 functional for application in organometallic and inorganometallic chemistry and for noncovalent interactions.

疟原虫var基因转换速率变化导致抗原变异[英]／Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A

Abstract: 抗原变异可使得多种致病微生物易于逃避宿主免疫应答。表达在感染红细胞表面的恶性疟原虫红细胞表面蛋白1（PfPMP1）与感染红细胞、内皮细胞、树突状细胞以及胎盘的单个或多个受体作用，在黏附及免疫逃避中起关键的作用。每个单倍体基因组var基因家族编码约60种成员，通过启动转录不同的var基因变异体为抗原变异提供了分子基础。

General atomic and molecular electronic structure system

Abstract: A description of the ab initio quantum chemistry package GAMESS is presented. Chemical systems containing atoms through radon can be treated with wave functions ranging from the simplest closed-shell case up to a general MCSCF case, permitting calculations at the necessary level of sophistication. Emphasis is given to novel features of the program. The parallelization strategy used in the RHF, ROHF, UHF, and GVB sections of the program is described, and detailed speecup results are given. Parallel calculations can be run on ordinary workstations as well as dedicated parallel machines. © John Wiley & Sons, Inc.