E
Erwin Frise
Researcher at Lawrence Berkeley National Laboratory
Publications - 16
Citations - 45705
Erwin Frise is an academic researcher from Lawrence Berkeley National Laboratory. The author has contributed to research in topics: Gene regulatory network & Medicine. The author has an hindex of 9, co-authored 13 publications receiving 32790 citations. Previous affiliations of Erwin Frise include University of California.
Papers
More filters
Journal ArticleDOI
Fiji: an open-source platform for biological-image analysis
Johannes Schindelin,Ignacio Arganda-Carreras,Erwin Frise,Verena Kaynig,Mark Longair,Tobias Pietzsch,Stephan Preibisch,Curtis Rueden,Stephan Saalfeld,Benjamin Schmid,Jean-Yves Tinevez,Daniel J. White,Volker Hartenstein,Kevin W. Eliceiri,Pavel Tomancak,Albert Cardona +15 more
TL;DR: Fiji is a distribution of the popular open-source software ImageJ focused on biological-image analysis that facilitates the transformation of new algorithms into ImageJ plugins that can be shared with end users through an integrated update system.
Journal ArticleDOI
Diversity and dynamics of the Drosophila transcriptome
James B. Brown,James B. Brown,Nathan Boley,Robert C. Eisman,Gemma E. May,Marcus H. Stoiber,Michael O. Duff,Ben W. Booth,Jiayu Wen,Soo Park,Ana Maria Suzuki,Kenneth H. Wan,Charles Yu,Dayu Zhang,Joseph W. Carlson,Lucy Cherbas,Brian D. Eads,David C. Miller,Keithanne Mockaitis,Johnny Roberts,Carrie A. Davis,Erwin Frise,Ann S. Hammonds,Sara Olson,Solomon Shenker,David Sturgill,Anastasia Samsonova,Anastasia Samsonova,Richard Weiszmann,Garret Robinson,Juan Hernandez,Justen Andrews,Peter J. Bickel,Piero Carninci,Peter Cherbas,Thomas R. Gingeras,Roger A. Hoskins,Thomas C. Kaufman,Eric C. Lai,Brian Oliver,Norbert Perrimon,Norbert Perrimon,Brenton R. Graveley,Susan E. Celniker +43 more
TL;DR: It is found that a small set of mostly neural-specific genes has the potential to encode thousands of transcripts each through extensive alternative promoter usage and RNA splicing in Drosophila melanogaster.
Journal ArticleDOI
The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective
Joshua S. Kaminker,Casey M. Bergman,Brent Kronmiller,Brent Kronmiller,Joseph W. Carlson,Robert Svirskas,Sandeep Patel,Erwin Frise,David A. Wheeler,Suzanna E. Lewis,Gerald M. Rubin,Gerald M. Rubin,Gerald M. Rubin,Michael Ashburner,Susan E. Celniker +14 more
TL;DR: This analysis represents an initial characterization of the transposable elements in the Release 3 euchromatic genomic sequence of D. melanogaster for which comparison to the transPOSable elements of other organisms can begin to be made.
Journal ArticleDOI
Finishing a whole-genome shotgun: Release 3 of the Drosophila melanogaster euchromatic genome sequence
Susan E. Celniker,David A. Wheeler,Brent Kronmiller,Joseph W. Carlson,Aaron L. Halpern,Sandeep Patel,Mark Raymond Adams,Mark Champe,Shannon Dugan,Erwin Frise,Ann Hodgson,Reed A. George,Roger A. Hoskins,Todd R. Laverty,Donna M. Muzny,Catherine R Nelson,Joanne Pacleb,Soo Park,Barret D. Pfeiffer,Stephen Richards,Stephen Richards,Erica Sodergren,Robert Svirskas,Paul E. Tabor,Kenneth H. Wan,Mark Stapleton,Granger G. Sutton,Craig Venter,George M. Weinstock,Steven E. Scherer,Eugene W. Myers,Richard A. Gibbs,Gerald M. Rubin,Gerald M. Rubin +33 more
TL;DR: The WGS strategy can efficiently produce a high-quality sequence of a metazoan genome while generating the reagents required for sequence finishing, however, the initial method of repeat assembly was flawed.
Journal ArticleDOI
Spatial expression of transcription factors in Drosophila embryonic organ development.
Ann S. Hammonds,Christopher A. Bristow,Christopher A. Bristow,William W. Fisher,Richard Weiszmann,Siqi Wu,Siqi Wu,Volker Hartenstein,Manolis Kellis,Bin Yu,Erwin Frise,Susan E. Celniker +11 more
TL;DR: A systematic characterization of spatiotemporal gene expression patterns for all known or predicted Drosophila TFs throughout embryogenesis, the first such comprehensive study for any metazoan animal, and a reference TF dataset for the investigation of gene regulatory networks in embryogenesis is produced.