F
Fabien Burki
Researcher at Uppsala University
Publications - 79
Citations - 8576
Fabien Burki is an academic researcher from Uppsala University. The author has contributed to research in topics: Phylogenomics & Phylogenetics. The author has an hindex of 36, co-authored 73 publications receiving 6884 citations. Previous affiliations of Fabien Burki include Science for Life Laboratory & Canadian Institute for Advanced Research.
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Journal ArticleDOI
The revised classification of eukaryotes
Sina M. Adl,Sina M. Adl,Alastair G. B. Simpson,Christopher E. Lane,Julius Lukeš,David Bass,Samuel S. Bowser,Matthew Brown,Fabien Burki,Micah Dunthorn,Vladimír Hampl,Aaron A. Heiss,Mona Hoppenrath,Enrique Lara,Line Le Gall,Denis H. Lynn,Hilary A. McManus,Edward A. D. Mitchell,Sharon E. Mozley‐Stanridge,Laura Wegener Parfrey,Jan Pawlowski,Sonja Rueckert,Laura Shadwick,Conrad L. Schoch,Alexey V. Smirnov,Frederick W. Spiegel +25 more
TL;DR: This revision of the classification of eukaryotes retains an emphasis on the protists and incorporates changes since 2005 that have resolved nodes and branches in phylogenetic trees.
Journal ArticleDOI
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing
Patrick J. Keeling,Patrick J. Keeling,Fabien Burki,Heather M. Wilcox,Bassem Allam,Eric E. Allen,Linda A. Amaral-Zettler,Linda A. Amaral-Zettler,E. Virginia Armbrust,John M. Archibald,John M. Archibald,Arvind K. Bharti,Callum J. Bell,Bank Beszteri,Kay D. Bidle,Connor Cameron,Lisa Campbell,David A. Caron,Rose Ann Cattolico,Jackie L. Collier,Kathryn J. Coyne,Simon K. Davy,Phillipe Deschamps,Sonya T. Dyhrman,Bente Edvardsen,Ruth D. Gates,Christopher J. Gobler,Spencer J. Greenwood,Stephanie Guida,Jennifer L. Jacobi,Kjetill S. Jakobsen,Erick R. James,Bethany D. Jenkins,Uwe John,Matthew D. Johnson,Andrew R. Juhl,Anja Kamp,Anja Kamp,Laura A. Katz,Ronald P. Kiene,Alexander Kudryavtsev,Alexander Kudryavtsev,Brian S. Leander,Senjie Lin,Connie Lovejoy,Denis H. Lynn,Denis H. Lynn,Adrian Marchetti,George B. McManus,Aurora M. Nedelcu,Susanne Menden-Deuer,Cristina Miceli,Thomas Mock,Marina Montresor,Mary Ann Moran,Shauna A. Murray,Govind Nadathur,Satoshi Nagai,Peter B. Ngam,Brian Palenik,Jan Pawlowski,Giulio Petroni,Gwenael Piganeau,Matthew C. Posewitz,Karin Rengefors,Giovanna Romano,Mary E. Rumpho,Tatiana A. Rynearson,Kelly B. Schilling,Declan C. Schroeder,Alastair G. B. Simpson,Alastair G. B. Simpson,Claudio H. Slamovits,Claudio H. Slamovits,David Roy Smith,G. Jason Smith,Sarah R. Smith,Heidi M. Sosik,Peter Stief,Edward C. Theriot,Scott N. Twary,Pooja E. Umale,Daniel Vaulot,Boris Wawrik,Glen L. Wheeler,William H. Wilson,Yan Xu,Adriana Zingone,Alexandra Z. Worden,Alexandra Z. Worden +89 more
TL;DR: In this paper, the authors describe a resource of 700 transcriptomes from marine microbial eukaryotes to help understand their role in the world's oceans and their biology, evolution, and ecology.
Journal ArticleDOI
Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes
Sina M. Adl,David Bass,David Bass,Christopher E. Lane,Julius Lukeš,Julius Lukeš,Conrad L. Schoch,Alexey V. Smirnov,Sabine Agatha,Cédric Berney,Matthew Brown,Fabien Burki,Paco Cárdenas,Ivan Čepička,Lyudmila V. Chistyakova,Javier del Campo,Micah Dunthorn,Micah Dunthorn,Bente Edvardsen,Yana Eglit,Laure Guillou,Vladimír Hampl,Aaron A. Heiss,Mona Hoppenrath,Timothy Y. James,Anna Karnkowska,Sergey Karpov,Sergey Karpov,Eunsoo Kim,Martin Kolisko,Alexander Kudryavtsev,Daniel J. G. Lahr,Enrique Lara,Line Le Gall,Denis H. Lynn,Denis H. Lynn,David G. Mann,Ramon Massana,Edward A. D. Mitchell,Christine Morrow,Jong Soo Park,Jan Pawlowski,Martha J. Powell,Daniel J. Richter,Sonja Rueckert,Lora L. Shadwick,Satoshi Shimano,Frederick W. Spiegel,Guifré Torruella,Noha H. Youssef,Vasily V. Zlatogursky,Vasily V. Zlatogursky,Qianqian Zhang +52 more
TL;DR: It is confirmed that eukaryotes form at least two domains, the loss of monophyly in the Excavata, robust support for the Haptista and Cryptista, and suggested primer sets for DNA sequences from environmental samples that are effective for each clade are provided.
Journal ArticleDOI
The New Tree of Eukaryotes
TL;DR: The combination of traditional culturing with maturing culture-free approaches and phylogenomics should accelerate the process of completing and resolving the eukaryote Tree of Life at its deepest levels.
Journal ArticleDOI
Phylogenomics Reshuffles the Eukaryotic Supergroups
Fabien Burki,Kamran Shalchian-Tabrizi,Marianne A. Minge,Åsmund Skjæveland,Sergey Nikolaev,Kjetill S. Jakobsen,Jan Pawlowski +6 more
TL;DR: This work reports the sequencing of expressed sequence tags for two species belonging to the supergroup Rhizaria and presents the analysis of a unique dataset combining 29908 amino acid positions and an extensive taxa sampling made of 49 mainly unicellular species representative of all supergroups.