F
Farit Mochamad Afendi
Researcher at Bogor Agricultural University
Publications - Â 63
Citations - Â 1029
Farit Mochamad Afendi is an academic researcher from Bogor Agricultural University. The author has contributed to research in topics: Computer science & Similarity (network science). The author has an hindex of 9, co-authored 56 publications receiving 808 citations. Previous affiliations of Farit Mochamad Afendi include Nara Institute of Science and Technology.
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KNApSAcK family databases: integrated metabolite-plant species databases for multifaceted plant research.
Farit Mochamad Afendi,Taketo Okada,Mami Yamazaki,Aki Hirai-Morita,Yukiko Nakamura,Kensuke Nakamura,Shun Ikeda,Hiroki Takahashi,Md. Altaf-Ul-Amin,Latifah Kosim Darusman,Kazuki Saito,Shigehiko Kanaya +11 more
TL;DR: A search engine within the KNApSAcK Core DB is developed, making it possible to search for metabolites based on an accurate mass, molecular formula, metabolite name or mass spectra in several ionization modes, and databases for retrieving metabolites related to plants used for a range of purposes are developed.
Journal ArticleDOI
Metabolomics of medicinal plants: the importance of multivariate analysis of analytical chemistry data.
Taketo Okada,Farit Mochamad Afendi,Md. Altaf-Ul-Amin,Hiroki Takahashi,Kensuke Nakamura,Shigehiko Kanaya +5 more
TL;DR: Practical cases in which metabolomic study was performed on medicinal plants are described, the utility of metabolomics for this research field is discussed, and focus on multivariate analysis is discussed.
Journal ArticleDOI
KNApSAcK Metabolite Activity Database for Retrieving the Relationships Between Metabolites and Biological Activities
Yukiko Nakamura,Farit Mochamad Afendi,Aziza Kawsar Parvin,Naoaki Ono,Ken Tanaka,Aki Hirai Morita,Tetsuo Sato,Tadao Sugiura,Altaf-Ul-Amin,Shigehiko Kanaya +9 more
TL;DR: The KNApSAcK Metabolite Activity DB is integrated within the KNAcK Family DBs to facilitate further systematized research in various omics fields, especially metabolomics, nutrigenomics and foodomics.
Journal ArticleDOI
Systems Biology in the Context of Big Data and Networks
TL;DR: This review gives an overview of the progress in big-data biology, and data handling and also introduces some applications of networks and multivariate analysis in systems biology.
Journal ArticleDOI
Data Mining Methods for Omics and Knowledge of Crude Medicinal Plants toward Big Data Biology.
Farit Mochamad Afendi,Farit Mochamad Afendi,Naoaki Ono,Yukiko Nakamura,Kensuke Nakamura,Latifah Kosim Darusman,Nelson Kibinge,Aki Hirai Morita,Ken Tanaka,Hisayuki Horai,Md. Altaf-Ul-Amin,Shigehiko Kanaya +11 more
TL;DR: Mathematical modeling introduced in the present study can be utilized in global analysis of big data targeting to reveal the underlying biology.