Global climate has fluctuated greatly during the past three million years, leading to the recent major ice ages. An inescapable consequence for most living organisms is great changes in their distribution, which are expressed differently in boreal, temperate and tropical zones. Such range changes can be expected to have genetic consequences, and the advent of DNA technology provides most suitable markers to examine these. Several good data sets are now available, which provide tests of expectations, insights into species colonization and unexpected genetic subdivision and mixture of species. The genetic structure of human populations may be viewed in the same context. The present genetic structure of populations, species and communities has been mainly formed by Quaternary ice ages, and genetic, fossil and physical data combined can greatly help our understanding of how organisms were so affected.

http://webpages.icav.up.pt/PTDC/BIA-BEC/105083/2008/hewitt2000.pdf

The genetic legacy of the Quaternary ice ages

Dead zones in the coastal oceans have spread exponentially since the 1960s and have serious consequences for ecosystem functioning. The formation of dead zones has been exacerbated by the increase in primary production and consequent worldwide coastal eutrophication fueled by riverine runoff of fertilizers and the burning of fossil fuels. Enhanced primary production results in an accumulation of particulate organic matter, which encourages microbial activity and the consumption of dissolved oxygen in bottom waters. Dead zones have now been reported from more than 400 systems, affecting a total area of more than 245,000 square kilometers, and are probably a key stressor on marine ecosystems.

Supporting Online Material for Spreading Dead Zones and Consequences for Marine Ecosystems

Estuarine and coastal transformation is as old as civilization yet has dramatically accelerated over the past 150 to 300 years. Reconstructed time lines, causes, and consequences of change in 12 once diverse and productive estuaries and coastal seas worldwide show similar patterns: Human impacts have depleted >90% of formerly important species, destroyed >65% of seagrass and wetland habitat, degraded water quality, and accelerated species invasions. Twentieth-century conservation efforts achieved partial recovery of upper trophic levels but have so far failed to restore former ecosystem structure and function. Our results provide detailed historical baselines and quantitative targets for ecosystem-based management and marine conservation.

/pdf/depletion-degradation-and-recovery-potential-of-estuaries-1hinljyave.pdf

Depletion, Degradation, and Recovery Potential of Estuaries and Coastal Seas

Population structure is the result of both present processes and past history. Molecular markers are proving of great value in describing the former, and it is important to similarly determine the latter in order to understand their respective contributions. The study of palaeo-climates has also advanced significantly, and in particular that of the Pleistocene ice ages, which modified species ranges considerably. The last ice age and rapid post-glacial colonization of Europe is summarized. Possible population genetic consequences of expansion northward from southern refugia, and those of remaining in these mountainous regions are discussed. A series of recent case studies are detailed where DNA sequence information has been used to describe species genetic variation and subdivision across Europe. These include a grasshopper, the hedgehog, oak trees, the common beech, the black alder, the brown bear, newts, shrews, water vole, silver fir and house mice. These molecular data confirm southern peninsulas of Europe as major ice age refugia, and in most cases demonstrate that genetically distinct taxa emerged from them. They can thus define genomic differences and so greatly augment previous fossil data. The refugial genomes contributed differently in various species to the re-colonization of Europe, with three broad patterns described as paradigms—«grasshopper», «hedgehog» and «bear». These different expansion patterns produced clusters of hybrid zones where they made contact, and it is argued that many species genomes may be further cryptically subdivided. A reduction in diversity from southern to northern Europe in the extent of allelic variation and species subdivision is seen; this is attributed to rapid expansion northward and the varied topography of southern refugia allowing populations to diverge through several ice ages. The differences in DNA sequence indicate that some species have been diverging in refugial regions for a few ice ages at most, whilst distinct lineages in other species suggest much more ancient separation.

https://www.fc.up.pt/mestr_biodiv/aulas/hewitt_1999.pdf

Post-glacial re-colonization of European biota

In marine ecosystems, rising atmospheric CO2 and climate change are associated with concurrent shifts in temperature, circulation, stratification, nutrient input, oxygen content, and ocean acidification, with potentially wideranging biological effects. Population-level shifts are occurring because of physiological intolerance to new environments, altered dispersal patterns, and changes in species interactions. Together with local climate-driven invasion and extinction, these processes result in altered community structure and diversity, including possible emergence of novel ecosystems. Impacts are particularly striking for the poles and the tropics, because of the sensitivity of polar ecosystems to sea-ice retreat and poleward species migrations as well as the sensitivity of coral-algal symbiosis to minor increases in temperature. Midlatitude upwelling systems, like the California Current, exhibit strong linkages between climate and species distributions, phenology, and demography. Aggregated effects may modify energy and material flows as well as biogeochemical cycles, eventually impacting the overall ecosystem functioning and services upon which people and societies depend.

/pdf/climate-change-impacts-on-marine-ecosystems-mu6opf56n1.pdf

Climate Change Impacts on Marine Ecosystems

A conceptual model explaining benthic foraminiferal microhabitats

. Coastal hypoxia (defined here as Hypoxia alters both the structure and function of benthic communities, but effects may differ with regional hypoxia history. Human-caused hypoxia is generally linked to eutrophication, and occurs adjacent to watersheds with large populations or agricultural activities. Many occurrences are seasonal, within estuaries, fjords or enclosed seas of the North Atlantic and the NW Pacific Oceans. Benthic faunal responses, elicited at oxygen levels below 2 ml L−1, typically involve avoidance or mortality of large species and elevated abundances of enrichment opportunists, sometimes prior to population crashes. Areas of low oxygen persist seasonally or continuously beneath upwelling regions, associated with the upper parts of oxygen minimum zones (SE Pacific, W Africa, N Indian Ocean). These have a distribution largely distinct from eutrophic areas and support a resident fauna that is adapted to survive and reproduce at oxygen concentrations

/pdf/effects-of-natural-and-human-induced-hypoxia-on-coastal-2nt30psige.pdf

Effects of natural and human-induced hypoxia on coastal benthos

Existing techniques for estimating natural fluctuations of sea level and global ice-volume from the recent geological past exploit fossil coral-reef terraces or oxygen-isotope records from benthic foraminifera. Fossil reefs reveal the magnitude of sea-level peaks (highstands) of the past million years, but fail to produce significant values for minima (lowstands) before the Last Glacial Maximum (LGM) about 20,000 years ago, a time at which sea level was about 120 m lower than it is today1,2,3,4. The isotope method provides a continuous sea-level record for the past 140,000 years (ref. 5) (calibrated with fossil-reef data6), but the realistic uncertainty in the sea-level estimates is around ±20 m. Here we present improved lowstand estimates—extending the record back to 500,000 years before present—using an independent method based on combining evidence of extreme high-salinity conditions in the glacial Red Sea with a simple hydraulic control model of water flow through the Strait of Bab-el-Mandab, which links the Red Sea to the open ocean. We find that the world can glaciate more intensely than during the LGM by up to an additional 20-m lowering of global sea-level. Such a 20-m difference is equivalent to a change in global ice-volume of the order of today's Greenland and West Antarctic ice-sheets.

Magnitudes of sea-level lowstands of the past 500,000 years

In the meso-oligotrophic Bay of Biscay, a diminishing downward organic matter flux with depth is accompanied by an important decrease of the live foraminiferal density. Although bottom water oxygenation is not directly influenced by organic matter input, the oxygenation of interstitial waters and the primary redox fronts do change in response to variations of the organic matter flux. The occurrence of deep and intermediate infaunal taxa can be linked to fundamental redox fronts and putative associated bacterial consortia. Our data are in agreement with the TROX-model, which explains the benthic foraminiferal microhabitat as a function of organic flux and benthic ecosystem oxygenation. Both the depth of the principle redox fronts and the microhabitat of deep infaunal species show important increases with depth. At the deepest oligotrophic stations, deep infaunal faunas become relatively poor. Therefore, the exported flux of organic matter appears to be the main parameter controlling the composition and the vertical distribution of benthic foraminiferal faunas below the sediment-water interface. The oxygenation of pore waters plays only a minor role. A species-level adaptation of the TROX-model is presented for the Bay of Biscay.

/pdf/live-benthic-foraminiferal-faunas-from-the-bay-of-biscay-47wzxfdhv3.pdf

Live benthic foraminiferal faunas from the Bay of Biscay: faunal density, composition, and microhabitats

Publisher Summary This chapter focuses on the paleoceanographical proxies based on deep-sea benthic foraminiferal assemblage characteristics, and presents the following three proxy relationships that are promising: those between benthic foraminiferal faunas and benthic ecosystem oxygenation, export productivity, and deep-sea water mass characteristics. Under most circumstances the composition of deep-sea benthic foraminiferal assemblages is controlled by a rather limited number of environmental factors. The available proxies based on benthic foraminiferal assemblage composition show that they have major potential, but further research is needed to add or improve the quantitative aspects. In many cases, such as bottom water oxygenation, and Corg flux to the ocean floor, it can be done by significantly increasing the size of existing databases. In other cases such as periodicity of the organic flux, time series observations are necessary. A major obstacle is insufficient knowledge of the differences between recent and fossil faunas due to taphonomical alterations. This phenomenon, of importance for all paleoceanographic proxies, can to some extent be solved relatively easily in the case of foraminiferal assemblages by detailed studies of their vertical succession in sediments deposited in the last 5,000 years, when environmental conditions were probably rather invariable in many areas. Proxies based on foraminiferal assemblage composition are fundamentally different from all geochemical proxies, and thus may provide independent reconstructions of essential oceanographic parameters.

Frans Jorissen

Papers

A conceptual model explaining benthic foraminiferal microhabitats

Effects of natural and human-induced hypoxia on coastal benthos

Magnitudes of sea-level lowstands of the past 500,000 years

Live benthic foraminiferal faunas from the Bay of Biscay: faunal density, composition, and microhabitats

Chapter Seven Paleoceanographical Proxies Based on Deep-Sea Benthic Foraminiferal Assemblage Characteristics