Gareth J. F. Jones

Bio: Gareth J. F. Jones is an academic researcher from Leeds Beckett University. The author has contributed to research in topics: Query expansion & Relevance (information retrieval). The author has an hindex of 49, co-authored 555 publications receiving 9567 citations. Previous affiliations of Gareth J. F. Jones include University of Exeter & Carnegie Learning.

The Interstellar Medium In Galaxies Seen A Billion Years After The Big Bang

Abstract: Evolution in the measured rest frame ultraviolet spectral slope and ultraviolet to optical flux ratios indicate a rapid evolution in the dust obscuration of galaxies during the first 3 billion years of cosmic time (z>4). This evolution implies a change in the average interstellar medium properties, but the measurements are systematically uncertain due to untested assumptions, and the inability to measure heavily obscured regions of the galaxies. Previous attempts to directly measure the interstellar medium in normal galaxies at these redshifts have failed for a number of reasons with one notable exception. Here we report measurements of the [CII] gas and dust emission in 9 typical (~1-4L*) star-forming galaxies ~1 billon years after the big bang (z~5-6). We find these galaxies have >12x less thermal emission compared with similar systems ~2 billion years later, and enhanced [CII] emission relative to the far-infrared continuum, confirming a strong evolution in the interstellar medium properties in the early universe. The gas is distributed over scales of 1-8 kpc, and shows diverse dynamics within the sample. These results are consistent with early galaxies having significantly less dust than typical galaxies seen at z<3 and being comparable to local low-metallicity systems.

Word Embedding based Generalized Language Model for Information Retrieval

Abstract: Word2vec, a state-of-the-art word embedding technique has gained a lot of interest in the NLP community. The embedding of the word vectors helps to retrieve a list of words that are used in similar contexts with respect to a given word. In this paper, we focus on using the word embeddings for enhancing retrieval effectiveness. In particular, we construct a generalized language model, where the mutual independence between a pair of words (say t and t') no longer holds. Instead, we make use of the vector embeddings of the words to derive the transformation probabilities between words. Specifically, the event of observing a term t in the query from a document d is modeled by two distinct events, that of generating a different term t', either from the document itself or from the collection, respectively, and then eventually transforming it to the observed query term t. The first event of generating an intermediate term from the document intends to capture how well does a term contextually fit within a document, whereas the second one of generating it from the collection aims to address the vocabulary mismatch problem by taking into account other related terms in the collection. Our experiments, conducted on the standard TREC collection, show that our proposed method yields significant improvements over LM and LDA-smoothed LM baselines.

Overview of the ShARe/CLEF eHealth Evaluation Lab 2013

Abstract: Discharge summaries and other free-text reports in healthcare transfer information between working shifts and geographic locations. Patients are likely to have difficulties in understanding their content, because of their medical jargon, non-standard abbreviations, and ward-specific idioms. This paper reports on an evaluation lab with an aim to support the continuum of care by developing methods and resources that make clinical reports in English easier to understand for patients, and which helps them in finding information related to their condition. This ShARe/CLEFeHealth2013 lab offered student mentoring and shared tasks: identification and normalisation of disorders 1a and 1b and normalisation of abbreviations and acronyms 2 in clinical reports with respect to terminology standards in healthcare as well as information retrieval 3 to address questions patients may have when reading clinical reports. The focus on patients' information needs as opposed to the specialised information needs of physicians and other healthcare workers was the main feature of the lab distinguishing it from previous shared tasks. De-identified clinical reports for the three tasks were from US intensive care and originated from the MIMIC II database. Other text documents for Task 3 were from the Internet and originated from the Khresmoi project. Task 1 annotations originated from the ShARe annotations. For Tasks 2 and 3, new annotations, queries, and relevance assessments were created. 64, 56, and 55 people registered their interest in Tasks 1, 2, and 3, respectively. 34 unique teams 3 members per team on average participated with 22, 17, 5, and 9 teams in Tasks 1a, 1b, 2 and 3, respectively. The teams were from Australia, China, France, India, Ireland, Republic of Korea, Spain, UK, and USA. Some teams developed and used additional annotations, but this strategy contributed to the system performance only in Task 2. The best systems had the F1 score of 0.75 in Task 1a; Accuracies of 0.59 and 0.72 in Tasks 1b and 2; and Precision at 10 of 0.52 in Task 3. The results demonstrate the substantial community interest and capabilities of these systems in making clinical reports easier to understand for patients. The organisers have made data and tools available for future research and development.

Query dependent pseudo-relevance feedback based on wikipedia

Abstract: Pseudo-relevance feedback (PRF) via query-expansion has been proven to be e®ective in many information retrieval (IR) tasks. In most existing work, the top-ranked documents from an initial search are assumed to be relevant and used for PRF. One problem with this approach is that one or more of the top retrieved documents may be non-relevant, which can introduce noise into the feedback process. Besides, existing methods generally do not take into account the significantly different types of queries that are often entered into an IR system. Intuitively, Wikipedia can be seen as a large, manually edited document collection which could be exploited to improve document retrieval effectiveness within PRF. It is not obvious how we might best utilize information from Wikipedia in PRF, and to date, the potential of Wikipedia for this task has been largely unexplored. In our work, we present a systematic exploration of the utilization of Wikipedia in PRF for query dependent expansion. Specifically, we classify TREC topics into three categories based on Wikipedia: 1) entity queries, 2) ambiguous queries, and 3) broader queries. We propose and study the effectiveness of three methods for expansion term selection, each modeling the Wikipedia based pseudo-relevance information from a different perspective. We incorporate the expansion terms into the original query and use language modeling IR to evaluate these methods. Experiments on four TREC test collections, including the large web collection GOV2, show that retrieval performance of each type of query can be improved. In addition, we demonstrate that the proposed method out-performs the baseline relevance model in terms of precision and robustness.

Using Multivariate Statistics

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The Theory of Island Biogeography

Abstract: Preface to the Princeton Landmarks in Biology Edition vii Preface xi Symbols Used xiii 1. The Importance of Islands 3 2. Area and Number of Speicies 8 3. Further Explanations of the Area-Diversity Pattern 19 4. The Strategy of Colonization 68 5. Invasibility and the Variable Niche 94 6. Stepping Stones and Biotic Exchange 123 7. Evolutionary Changes Following Colonization 145 8. Prospect 181 Glossary 185 References 193 Index 201

Machine learning

Abstract: Machine Learning is the study of methods for programming computers to learn. Computers are applied to a wide range of tasks, and for most of these it is relatively easy for programmers to design and implement the necessary software. However, there are many tasks for which this is difficult or impossible. These can be divided into four general categories. First, there are problems for which there exist no human experts. For example, in modern automated manufacturing facilities, there is a need to predict machine failures before they occur by analyzing sensor readings. Because the machines are new, there are no human experts who can be interviewed by a programmer to provide the knowledge necessary to build a computer system. A machine learning system can study recorded data and subsequent machine failures and learn prediction rules. Second, there are problems where human experts exist, but where they are unable to explain their expertise. This is the case in many perceptual tasks, such as speech recognition, hand-writing recognition, and natural language understanding. Virtually all humans exhibit expert-level abilities on these tasks, but none of them can describe the detailed steps that they follow as they perform them. Fortunately, humans can provide machines with examples of the inputs and correct outputs for these tasks, so machine learning algorithms can learn to map the inputs to the outputs. Third, there are problems where phenomena are changing rapidly. In finance, for example, people would like to predict the future behavior of the stock market, of consumer purchases, or of exchange rates. These behaviors change frequently, so that even if a programmer could construct a good predictive computer program, it would need to be rewritten frequently. A learning program can relieve the programmer of this burden by constantly modifying and tuning a set of learned prediction rules. Fourth, there are applications that need to be customized for each computer user separately. Consider, for example, a program to filter unwanted electronic mail messages. Different users will need different filters. It is unreasonable to expect each user to program his or her own rules, and it is infeasible to provide every user with a software engineer to keep the rules up-to-date. A machine learning system can learn which mail messages the user rejects and maintain the filtering rules automatically. Machine learning addresses many of the same research questions as the fields of statistics, data mining, and psychology, but with differences of emphasis. Statistics focuses on understanding the phenomena that have generated the data, often with the goal of testing different hypotheses about those phenomena. Data mining seeks to find patterns in the data that are understandable by people. Psychological studies of human learning aspire to understand the mechanisms underlying the various learning behaviors exhibited by people (concept learning, skill acquisition, strategy change, etc.).

Pattern Recognition and Machine Learning

Abstract: Probability Distributions.- Linear Models for Regression.- Linear Models for Classification.- Neural Networks.- Kernel Methods.- Sparse Kernel Machines.- Graphical Models.- Mixture Models and EM.- Approximate Inference.- Sampling Methods.- Continuous Latent Variables.- Sequential Data.- Combining Models.