G
Gargi Dayama
Researcher at University of Minnesota
Publications - 22
Citations - 18408
Gargi Dayama is an academic researcher from University of Minnesota. The author has contributed to research in topics: Genome & Genomics. The author has an hindex of 10, co-authored 18 publications receiving 12647 citations. Previous affiliations of Gargi Dayama include University of Michigan & University of South Carolina.
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A global reference for human genetic variation.
Adam Auton,Gonçalo R. Abecasis,David Altshuler,Richard Durbin,David R. Bentley,Aravinda Chakravarti,Andrew G. Clark,Peter Donnelly,Evan E. Eichler,Paul Flicek,Stacey Gabriel,Richard A. Gibbs,Eric D. Green,Matthew E. Hurles,Bartha Maria Knoppers,Jan O. Korbel,Eric S. Lander,Charles Lee,Hans Lehrach,Elaine R. Mardis,Gabor T. Marth,Gil McVean,Deborah A. Nickerson,Jeanette Schmidt,Stephen T. Sherry,Jun Wang,Richard K. Wilson,Eric Boerwinkle,Harsha Doddapaneni,Yi Han,Viktoriya Korchina,Christie Kovar,Sandra L. Lee,Donna M. Muzny,Jeffrey G. Reid,Yiming Zhu,Yuqi Chang,Qiang Feng,Qiang Feng,Xiaodong Fang,Xiaodong Fang,Xiaosen Guo,Xiaosen Guo,Min Jian,Min Jian,Hui Jiang,Hui Jiang,Xin Jin,Tianming Lan,Guoqing Li,Jingxiang Li,Yingrui Li,Shengmao Liu,Xiao Liu,Xiao Liu,Yao Lu,Xuedi Ma,Meifang Tang,Bo Wang,Guangbiao Wang,Honglong Wu,Renhua Wu,Xun Xu,Ye Yin,Dandan Zhang,Wenwei Zhang,Jiao Zhao,Meiru Zhao,Xiaole Zheng,Namrata Gupta,Neda Gharani,Lorraine Toji,Norman P. Gerry,Alissa M. Resch,Jonathan Barker,Laura Clarke,Laurent Gil,Sarah E. Hunt,Gavin Kelman,Eugene Kulesha,Rasko Leinonen,William M. McLaren,Rajesh Radhakrishnan,Asier Roa,Dmitriy Smirnov,Richard Smith,Ian Streeter,Anja Thormann,Iliana Toneva,Brendan Vaughan,Xiangqun Zheng-Bradley,Russell J. Grocock,Sean Humphray,Terena James,Zoya Kingsbury,Ralf Sudbrak,M. Albrecht,Vyacheslav Amstislavskiy,Tatiana A. Borodina,Matthias Lienhard,Florian Mertes,Marc Sultan,Bernd Timmermann,Marie-Laure Yaspo,Lucinda Fulton,Victor Ananiev,Zinaida Belaia,Dimitriy Beloslyudtsev,Nathan Bouk,Chao Chen,Deanna M. Church,Robert M. Cohen,Charles Cook,John Garner,Timothy Hefferon,Mikhail Kimelman,Chunlei Liu,John Lopez,Peter Meric,Chris O’Sullivan,Yuri Ostapchuk,Lon Phan,Sergiy Ponomarov,Valerie A. Schneider,Eugene Shekhtman,Karl Sirotkin,Douglas J. Slotta,Hua Zhang,Senduran Balasubramaniam,John Burton,Petr Danecek,Thomas M. Keane,Anja Kolb-Kokocinski,Shane A. McCarthy,James Stalker,Michael A. Quail,Christopher Davies,Jeremy Gollub,Teresa Webster,Brant Wong,Yiping Zhan,Christopher L. Campbell,Yu Kong,Anthony Marcketta,Fuli Yu,Lilian Antunes,Matthew N. Bainbridge,Aniko Sabo,Zhuoyi Huang,Lachlan J. M. Coin,Lin Fang,Lin Fang,Qibin Li,Zhenyu Li,Haoxiang Lin,Binghang Liu,Ruibang Luo,Haojing Shao,Haojing Shao,Yinlong Xie,Chen Ye,Chang Yu,Fan Zhang,Hancheng Zheng,Zhu Hongmei,Can Alkan,Elif Dal,Fatma Kahveci,Erik Garrison,Deniz Kural,Wan-Ping Lee,Wen Fung Leong,Michael Strömberg,Alistair Ward,Jiantao Wu,Mengyao Zhang,Mark J. Daly,Mark A. DePristo,Robert E. Handsaker,Robert E. Handsaker,Eric Banks,Gaurav Bhatia,Guillermo del Angel,Giulio Genovese,Heng Li,Seva Kashin,Seva Kashin,Steven A. McCarroll,Steven A. McCarroll,James Nemesh,Ryan Poplin,Seungtai Yoon,Jayon Lihm,Vladimir Makarov,Srikanth Gottipati,Alon Keinan,Juan L. Rodriguez-Flores,Tobias Rausch,Markus Hsi-Yang Fritz,Adrian M. Stütz,Kathryn Beal,Avik Datta,Javier Herrero,Graham R. S. Ritchie,Daniel R. Zerbino,Pardis C. Sabeti,Pardis C. Sabeti,Ilya Shlyakhter,Ilya Shlyakhter,Stephen F. Schaffner,Stephen F. Schaffner,Joseph J. Vitti,Joseph J. Vitti,David Neil Cooper,Edward V. Ball,Peter D. Stenson,Bret Barnes,Markus J. Bauer,R. Keira Cheetham,Anthony J. Cox,Michael A. Eberle,Scott Kahn,Lisa Murray,John F. Peden,Richard Shaw,Eimear E. Kenny,Mark A. Batzer,Miriam K. Konkel,Jerilyn A. Walker,Daniel G. MacArthur,Monkol Lek,Ralf Herwig,Li Ding,Daniel C. Koboldt,David E. Larson,Kai Ye,Simon Gravel,Anand Swaroop,Emily Y. Chew,Tuuli Lappalainen,Yaniv Erlich,Melissa Gymrek,Melissa Gymrek,Thomas Willems,Jared T. Simpson,Mark D. Shriver,Jeffrey A. Rosenfeld,Carlos Bustamante,Stephen B. Montgomery,Francisco M. De La Vega,Jake K. Byrnes,Andrew Carroll,Marianne K. DeGorter,Phil Lacroute,Brian K. Maples,Alicia R. Martin,Andrés Moreno-Estrada,Andrés Moreno-Estrada,Suyash Shringarpure,Fouad Zakharia,Eran Halperin,Eran Halperin,Yael Baran,Eliza Cerveira,Jaeho Hwang,Ankit Malhotra,Dariusz Plewczynski,Kamen Radew,Mallory Romanovitch,Chengsheng Zhang,Fiona Hyland,David Craig,Alexis Christoforides,Nils Homer,Tyler Izatt,Ahmet Kurdoglu,Shripad Sinari,Kevin Squire,Chunlin Xiao,Jonathan Sebat,Danny Antaki,Madhusudan Gujral,Amina Noor,Kenny Ye,Esteban G. Burchard,Ryan D. Hernandez,Christopher R. Gignoux,David Haussler,David Haussler,Sol Katzman,W. James Kent,Bryan Howie,Andres Ruiz-Linares,Emmanouil T. Dermitzakis,Emmanouil T. Dermitzakis,Scott E. Devine,Hyun Min Kang,Jeffrey M. Kidd,Thomas W. Blackwell,Sean Caron,Wei Chen,S. Emery,Lars G. Fritsche,Christian Fuchsberger,Goo Jun,Goo Jun,Bingshan Li,Robert H. Lyons,Chris Scheller,Carlo Sidore,Carlo Sidore,Carlo Sidore,Shiya Song,Elzbieta Sliwerska,Daniel Taliun,Adrian Tan,Ryan P. Welch,Mary Kate Wing,Xiaowei Zhan,Philip Awadalla,Philip Awadalla,Alan Hodgkinson,Yun Li,Xinghua Shi,Andrew Quitadamo,Gerton Lunter,Jonathan Marchini,Simon Myers,Claire Churchhouse,Olivier Delaneau,Olivier Delaneau,Anjali Gupta-Hinch,Warren W. Kretzschmar,Zamin Iqbal,Iain Mathieson,Androniki Menelaou,Androniki Menelaou,Andy Rimmer,Dionysia Kiara Xifara,Taras K. Oleksyk,Yunxin Fu,Xiaoming Liu,Momiao Xiong,Lynn B. Jorde,David J. Witherspoon,Jinchuan Xing,Brian L. Browning,Sharon R. Browning,Fereydoun Hormozdiari,Peter H. Sudmant,Ekta Khurana,Chris Tyler-Smith,Cornelis A. Albers,Qasim Ayub,Yuan Chen,Vincenza Colonna,Vincenza Colonna,Luke Jostins,Klaudia Walter,Yali Xue,Mark Gerstein,Alexej Abyzov,Suganthi Balasubramanian,Jieming Chen,Declan Clarke,Yao Fu,Arif Harmanci,Mike Jin,Dong-Hoon Lee,Jeremy Liu,Xinmeng Jasmine Mu,Xinmeng Jasmine Mu,Jing Zhang,Yan Zhang,Christopher Hartl,Khalid Shakir,Jeremiah D. Degenhardt,Sascha Meiers,Benjamin Raeder,Francesco Paolo Casale,Oliver Stegle,Eric-Wubbo Lameijer,Ira M. Hall,Vineet Bafna,Jacob J. Michaelson,Eugene J. Gardner,Ryan E. Mills,Gargi Dayama,Ken Chen,Xian Fan,Zechen Chong,Tenghui Chen,Mark Chaisson,John Huddleston,Maika Malig,Bradley J. Nelson,Nicholas F. Parrish,Ben Blackburne,Sarah J. Lindsay,Zemin Ning,Yujun Zhang,Hugo Y. K. Lam,Cristina Sisu,Danny Challis,Uday S. Evani,James T. Lu,Uma Nagaswamy,Jin Yu,Wangshen Li,Lukas Habegger,Haiyuan Yu,Fiona Cunningham,Ian Dunham,Kasper Lage,Kasper Lage,Jakob Berg Jespersen,Jakob Berg Jespersen,Jakob Berg Jespersen,Heiko Horn,Heiko Horn,Donghoon Kim,Rob DeSalle,Apurva Narechania,Melissa A. Wilson Sayres,Fernando L. Mendez,G. David Poznik,Peter A. Underhill,David Mittelman,Ruby Banerjee,Maria Cerezo,Thomas W. Fitzgerald,Sandra Louzada,Andrea Massaia,Fengtang Yang,Divya Kalra,Walker Hale,Xu Dan,Kathleen C. Barnes,Christine Beiswanger,Hongyu Cai,Hongzhi Cao,Hongzhi Cao,Brenna M. Henn,Danielle Jones,Jane Kaye,Alastair Kent,Angeliki Kerasidou,Rasika A. Mathias,Pilar N. Ossorio,Michael Parker,Charles N. Rotimi,Charmaine D.M. Royal,Karla Sandoval,Yeyang Su,Zhongming Tian,Sarah A. Tishkoff,Marc Via,Yuhong Wang,Huanming Yang,Ling Yang,Jiayong Zhu,Walter F. Bodmer,Gabriel Bedoya,Zhiming Cai,Yang Gao,Jiayou Chu,Leena Peltonen,Andrés C. García-Montero,Alberto Orfao,Julie Dutil,Juan Carlos Martínez-Cruzado,R. Mathias,Anselm Hennis,Harold Watson,Colin A. McKenzie,Firdausi Qadri,Regina C. LaRocque,Xiaoyan Deng,Danny Asogun,Onikepe A. Folarin,Christian T. Happi,Omonwunmi Omoniwa,Matt Stremlau,Matt Stremlau,Ridhi Tariyal,Ridhi Tariyal,M Jallow,M Jallow,Fatoumatta Sisay Joof,Fatoumatta Sisay Joof,Tumani Corrah,Tumani Corrah,Kirk A. Rockett,Kirk A. Rockett,Dominic P. Kwiatkowski,Dominic P. Kwiatkowski,Jaspal S. Kooner,Tran Tinh Hien,Sarah J. Dunstan,Sarah J. Dunstan,Nguyen ThuyHang,Richard Fonnie,Robert F. Garry,Lansana Kanneh,Lina M. Moses,John S. Schieffelin,Donald S. Grant,Carla Gallo,Giovanni Poletti,Danish Saleheen,Asif Rasheed,Lisa D. Brooks,Adam Felsenfeld,Jean E. McEwen,Yekaterina Vaydylevich,Audrey Duncanson,Michael Dunn,Jeffery A. Schloss +517 more
TL;DR: The 1000 Genomes Project set out to provide a comprehensive description of common human genetic variation by applying whole-genome sequencing to a diverse set of individuals from multiple populations, and has reconstructed the genomes of 2,504 individuals from 26 populations using a combination of low-coverage whole-generation sequencing, deep exome sequencing, and dense microarray genotyping.
A global reference for human genetic variation
Adam Auton,Gonçalo R. Abecasis,David Altshuler,Richard Durbin,David R. Bentley,Aravinda Chakravarti,Andrew G. Clark,Peter Donnelly,Evan E. Eichler,Paul Flicek,Stacey Gabriel,Richard A. Gibbs,Eric D. Green,Matthew E. Hurles,Bartha Maria Knoppers,Jan O. Korbel,Eric S. Lander,Charles Kai-Wu Lee,Hans Lehrach,Elaine R. Mardis,Gabor T. Marth,Gil McVean,Deborah A. Nickerson,Jeanette Schmidt,Stephen T. Sherry,Jun Wang,Richard K. Wilson,Eric Boerwinkle,Harsha Doddapaneni,Yi Han,Viktoriya Korchina,Christie Kovar,Sandra J. Lee,Donna M. Muzny,Jeffrey G. Reid,Yiming Zhu,Yuqi Chang,Qiang Feng,Xiaodong Fang,Xiaosen Guo,Min Jian,Hui Jiang,Xin Jin,Tianming Lan,Guoqing Li,Jingxiang Li,Yingrui Li,Shengmao Liu,Xiao Liu,Yao Lu,Xuedi Ma,Meifang Tang,Bo Wang,Guangbiao Wang,Honglong Wu,Renhua Wu,Xun Xu,Ye Yin,Dandan Zhang,Wenwei Zhang,Jiao Zhao,Meiru Zhao,Xiaole Zheng,Namrata Gupta,Neda Gharani,Lorraine Toji,Norman P. Gerry,Alissa M. Resch,Jonathan Barker,Laura Clarke,Laurent Gil,Sarah E. Hunt,Gavin Kelman,Eugene Kulesha,Rasko Leinonen,William M. McLaren,Rajesh Radhakrishnan,Asier Roa,Dmitriy Smirnov,Richard Smith,Ian Streeter,Anja Thormann,Iliana Toneva,Brendan Vaughan,Xiangqun Zheng-Bradley,Russell J. Grocock,Sean Humphray,Terena James,Zoya Kingsbury,Ralf Sudbrak,M. Albrecht,Vyacheslav Amstislavskiy,Tatiana A. Borodina,Matthias Lienhard,Florian Mertes,Marc Sultan,Bernd Timmermann,Marie-Laure Yaspo,Lucinda Fulton,Robert S. Fulton,Victor Ananiev,Zinaida Belaia,Dimitriy Beloslyudtsev,Nathan Bouk,Chao Chen,Deanna M. Church,Robert M. Cohen,Charles Cook,John Garner,Timothy Hefferon,Mikhail Kimelman,Chunlei Liu,John Lopez,Peter Meric,Chris O’Sullivan,Yuri Ostapchuk,Lon Phan,Sergiy Ponomarov,Valerie A. Schneider,Eugene Shekhtman,Karl Sirotkin,Douglas J. Slotta,Hua Zhang,Senduran Balasubramaniam,John Burton,Petr Danecek,Thomas M. Keane,Anja Kolb-Kokocinski,Shane A. McCarthy,James Stalker,Michael A. Quail,Christopher Davies,Jeremy Gollub,Teresa Webster,Brant Wong,Yiping Zhan,Christopher L. Campbell,Yu Kong,Anthony Marcketta,Fuli Yu,Lilian Antunes,Matthew N. Bainbridge,Aniko Sabo,Zhuoyi Huang,Lachlan J. M. Coin,Lin Fang,Qibin Li,Zhenyu Li,Haoxiang Lin,Binghang Liu,Ruibang Luo,Haojing Shao,Yinlong Xie,Chen Ye,Chang Yu,Fan Zhang,Hancheng Zheng,Hongmei Zhu,Can Alkan,Elif Dal,Fatma Kahveci,Erik Garrison,Deniz Kural,Wan-Ping Lee,Wen Fung Leong,Michael Strömberg,Alistair Ward,Jiantao Wu,Mengyao Zhang,Mark J. Daly,Mark A. DePristo,Robert E. Handsaker,Eric Banks,Gaurav Bhatia,Guillermo del Angel,Giulio Genovese,Heng Li,Seva Kashin,Steven A. McCarroll,James Nemesh,Ryan Poplin,Seungtai Yoon,Jayon Lihm,Vladimir Makarov,Srikanth Gottipati,Alon Keinan,Juan L. Rodriguez-Flores,Tobias Rausch,Markus Hsi-Yang Fritz,Adrian M. Stütz,Kathryn Beal,Avik Datta,Javier Herrero,Graham R. S. Ritchie,Daniel R. Zerbino,Pardis C. Sabeti,Ilya Shlyakhter,Stephen F. Schaffner,Joseph J. Vitti,David Neil Cooper,Edward V. Ball,Peter D. Stenson,Bret Barnes,Markus J. Bauer,R. Keira Cheetham,Anthony J. Cox,Michael A. Eberle,Scott Kahn,Lisa Murray,John F. Peden,Richard Shaw,Eimear E. Kenny,Mark A. Batzer,Miriam K. Konkel,Jerilyn A. Walker,Daniel G. MacArthur,Monkol Lek,Ralf Herwig,Li Ding,Daniel C. Koboldt,David E. Larson,Kai Ye,Simon Gravel,Anand Swaroop,Emily Y. Chew,Tuuli Lappalainen,Yaniv Erlich,Melissa Gymrek,Thomas Willems,Jared T. Simpson,Mark D. Shriver,Jeffrey A. Rosenfeld,Carlos Bustamante,Stephen B. Montgomery,Francisco M. De La Vega,Jake K. Byrnes,Andrew Carroll,Marianne K. DeGorter,Phil Lacroute,Brian K. Maples,Alicia R. Martin,Andrés Moreno-Estrada,Suyash Shringarpure,Fouad Zakharia,Eran Halperin,Yael Baran,Eliza Cerveira,Jaeho Hwang,Ankit Malhotra,Dariusz Plewczynski,Kamen Radew,Mallory Romanovitch,Chengsheng Zhang,Fiona Hyland,David Craig,Alexis Christoforides,Nils Homer,Tyler Izatt,Ahmet Kurdoglu,Shripad Sinari,Kevin Squire,Chunlin Xiao,Jonathan Sebat,Danny Antaki,Madhusudan Gujral,Amina Noor,Kenny Ye,Esteban G. Burchard,Ryan D. Hernandez,Christopher R. Gignoux,David Haussler,Sol Katzman,W. James Kent,Bryan Howie,Andres Ruiz-Linares,Emmanouil T. Dermitzakis,Scott E. Devine,Hyun Min Kang,Jeffrey M. Kidd,Thomas W. Blackwell,Sean Caron,Wei Chen,S. Emery,Lars G. Fritsche,Christian Fuchsberger,Goo Jun,Bingshan Li,R. P. Lyons,Chris Scheller,Carlo Sidore,Shiya Song,Elzbieta Sliwerska,Daniel Taliun,Adrian Tan,Ryan P. Welch,Mary Kate Wing,Xiaowei Zhan,Philip Awadalla,Alan Hodgkinson,Yun Li,Xinghua Shi,Andrew Quitadamo,Gerton Lunter,Jonathan Marchini,Simon Myers,Claire Churchhouse,Olivier Delaneau,Anjali Gupta-Hinch,Warren W. Kretzschmar,Zamin Iqbal,Iain Mathieson,Androniki Menelaou,Andrew J. Rimmer,Dionysia K. Xifara,Taras K. Oleksyk,Yunxin Fu,Xiaoming Liu,Momiao Xiong,Lynn B. Jorde,David J. Witherspoon,Jinchuan Xing,Brian L. Browning,Sharon R. Browning,Fereydoun Hormozdiari,Peter H. Sudmant,Ekta Khurana,Chris Tyler-Smith,Cornelis A. Albers,Qasim Ayub,Yuan Chen,Vincenza Colonna,Luke Jostins,Klaudia Walter,Yali Xue,Mark Gerstein,Alexej Abyzov,Suganthi Balasubramanian,Jieming Chen,Declan Clarke,Yao Fu,Arif Harmanci,Mike Jin,Dong-Hoon Lee,Jeremy Liu,Xinmeng Jasmine Mu,Jing Zhang,Yan Zhang,Christopher Hartl,Khalid Shakir,Jeremiah D. Degenhardt,Sascha Meiers,Benjamin Raeder,Francesco Paolo Casale,Oliver Stegle,Eric-Wubbo Lameijer,Ira M. Hall,Vineet Bafna,Jacob J. Michaelson,Eugene J. Gardner,Ryan E. Mills,Gargi Dayama,Ken Chen,Xian Fan,Zechen Chong,Tenghui Chen,Mark Chaisson,John Huddleston,Maika Malig,Bradley J. Nelson,Nicholas F. Parrish,Ben Blackburne,Sarah J. Lindsay,Zemin Ning,Yujun Zhang,Hugo Y. K. Lam,Cristina Sisu,Danny Challis,Uday S. Evani,James T. Lu,Uma Nagaswamy,Jin Yu,Wangshen Li,Lukas Habegger,Haiyuan Yu,Fiona Cunningham,Ian Dunham,Kasper Lage,Jakob Berg Jespersen,Heiko Horn,Donghoon Kim,Rob DeSalle,Apurva Narechania,Melissa A. Wilson Sayres,Fernando L. Mendez,G. David Poznik,Peter A. Underhill,Lachlan Coin,David Mittelman,Ruby Banerjee,Maria Cerezo,Thomas W. Fitzgerald,Sandra Louzada,Andrea Massaia,Graham R S Ritchie,Fengtang Yang,Divya Kalra,Walker Hale,Xu Dan,Kathleen C. Barnes,Christine Beiswanger,Hongyu Cai,Hongzhi Cao,Brenna M. Henn,Danielle Jones,Jane Kaye,Alastair Kent,Angeliki Kerasidou,Rasika A. Mathias,Pilar N. Ossorio,Michael Parker,Charles N. Rotimi,Charmaine D.M. Royal,Karla Sandoval,Yeyang Su,Zhongming Tian,Sarah A. Tishkoff,Marc Via,Yuhong Wang,Huanming Yang,Ling Yang,Jiayong Zhu,Walter F. Bodmer,Gabriel Bedoya,Zhiming Cai,Yang Gao,Jiayou Chu,Leena Peltonen,Andrés C. García-Montero,Alberto Orfao,Julie Dutil,Juan Carlos Martínez-Cruzado,R. Mathias,Anselm Hennis,Harold Watson,Colin A. McKenzie,Firdausi Qadri,Regina C. LaRocque,Xiaoyan Deng,Danny Asogun,Onikepe A. Folarin,Christian T. Happi,Omonwunmi Omoniwa,Matt Stremlau,Ridhi Tariyal,Muminatou Jallow,Fatoumatta Sisay Joof,Tumani Corrah,Kirk A. Rockett,Dominic P. Kwiatkowski,Jaspal S. Kooner,Trâ`n Tịnh Hiê`n,Sarah J. Dunstan,Nguyen Thuy Hang,Richard Fonnie,Robert F. Garry,Lansana Kanneh,Lina M. Moses,John S. Schieffelin,Don Grant,Carla Gallo,Giovanni Poletti,Danish Saleheen,Asif Rasheed,Lisa D. Brooks,Adam Felsenfeld,Jean E. McEwen,Yekaterina Vaydylevich,Audrey Duncanson,Michael Dunn,Jeffery A. Schloss +479 more
TL;DR: The 1000 Genomes Project as mentioned in this paper provided a comprehensive description of common human genetic variation by applying whole-genome sequencing to a diverse set of individuals from multiple populations, and reported the completion of the project, having reconstructed the genomes of 2,504 individuals from 26 populations using a combination of low-coverage whole genome sequencing, deep exome sequencing and dense microarray genotyping.
Journal ArticleDOI
An integrated map of structural variation in 2,504 human genomes
Peter H. Sudmant,Tobias Rausch,Eugene J. Gardner,Robert E. Handsaker,Robert E. Handsaker,Alexej Abyzov,John Huddleston,Yan Zhang,Kai Ye,Goo Jun,Goo Jun,Markus His Yang Fritz,Miriam K. Konkel,Ankit Malhotra,Adrian M. Stütz,Xinghua Shi,Francesco Paolo Casale,Jieming Chen,Fereydoun Hormozdiari,Gargi Dayama,Ken Chen,Maika Malig,Mark Chaisson,Klaudia Walter,Sascha Meiers,Seva Kashin,Seva Kashin,Erik Garrison,Adam Auton,Hugo Y. K. Lam,Xinmeng Jasmine Mu,Xinmeng Jasmine Mu,Can Alkan,Danny Antaki,Taejeong Bae,Eliza Cerveira,Peter S. Chines,Zechen Chong,Laura Clarke,Elif Dal,Li Ding,S. Emery,Xian Fan,Madhusudan Gujral,Fatma Kahveci,Jeffrey M. Kidd,Yu Kong,Eric-Wubbo Lameijer,Shane A. McCarthy,Paul Flicek,Richard A. Gibbs,Gabor T. Marth,Christopher E. Mason,Androniki Menelaou,Androniki Menelaou,Donna M. Muzny,Bradley J. Nelson,Amina Noor,Nicholas F. Parrish,Matthew Pendleton,Andrew Quitadamo,Benjamin Raeder,Eric E. Schadt,Mallory Romanovitch,Andreas Schlattl,Robert Sebra,Andrey A. Shabalin,Andreas Untergasser,Jerilyn A. Walker,Min Wang,Fuli Yu,Chengsheng Zhang,Jing Zhang,Xiangqun Zheng-Bradley,Wanding Zhou,Thomas Zichner,Jonathan Sebat,Mark A. Batzer,Steven A. McCarroll,Steven A. McCarroll,Ryan E. Mills,Mark Gerstein,Ali Bashir,Oliver Stegle,Scott E. Devine,Charles Lee,Evan E. Eichler,Jan O. Korbel +87 more
TL;DR: In this paper, the authors describe an integrated set of eight structural variant classes comprising both balanced and unbalanced variants, which are constructed using short-read DNA sequencing data and statistically phased onto haplotype blocks in 26 human populations.
Journal ArticleDOI
The genomic landscape of polymorphic human nuclear mitochondrial insertions
TL;DR: It is found that recent Numt insertions are derived from throughout the mitochondrial genome, including the D-loop, and have integration biases that differ in some respects from previous studies on older, fixed NumtS in the reference genome.
Journal ArticleDOI
A global metagenomic map of urban microbiomes and antimicrobial resistance
David Danko,Daniela Bezdan,Evan E. Afshin,Sofia Ahsanuddin,Chandrima Bhattacharya,Daniel Butler,Kern Rei Chng,Daisy Donnellan,Jochen Hecht,Katelyn Jackson,Katerina Kuchin,Mikhail Karasikov,Mikhail Karasikov,Mikhail Karasikov,Abigail Lyons,Lauren Mak,Dmitry Meleshko,Harun Mustafa,Harun Mustafa,Harun Mustafa,Beth Mutai,Russell Y. Neches,Amanda Ng,Olga Nikolayeva,Tatyana Nikolayeva,Eileen Png,Krista Ryon,Jorge L. Sanchez,Heba Shaaban,Maria A. Sierra,Dominique Thomas,Ben Young,Omar O. Abudayyeh,Josue Alicea,Malay Bhattacharyya,Ran Blekhman,Eduardo Castro-Nallar,Ana M. Cañas,Aspassia D. Chatziefthimiou,Robert W. Crawford,Francesca De Filippis,Youping Deng,Christelle Desnues,Emmanuel Dias-Neto,Marius Dybwad,Eran Elhaik,Danilo Ercolini,Alina Frolova,Dennis Gankin,Jonathan S. Gootenberg,Alexandra B. Graf,David C. Green,Iman Hajirasouliha,Jaden J.A. Hastings,Mark Hernandez,Gregorio Iraola,Gregorio Iraola,Gregorio Iraola,Soojin Jang,André Kahles,André Kahles,Frank J. Kelly,Kaymisha Knights,Nikos C. Kyrpides,Paweł P. Łabaj,Paweł P. Łabaj,Patrick K. H. Lee,Marcus H. Y. Leung,Per O. Ljungdahl,Gabriella Mason-Buck,Ken McGrath,Cem Meydan,Emmanuel F. Mongodin,Milton Ozório Moraes,Niranjan Nagarajan,Marina Nieto-Caballero,Houtan Noushmehr,Manuela Oliveira,Stephan Ossowski,O. Osuolale,Orhan Özcan,David Paez-Espino,Nicolás Rascovan,Hugues Richard,Hugues Richard,Gunnar Rätsch,Gunnar Rätsch,Gunnar Rätsch,Lynn M. Schriml,Torsten Semmler,Osman U. Sezerman,Leming Shi,Tieliu Shi,Rania Siam,Le Huu Song,Haruo Suzuki,Denise Syndercombe Court,Scott Tighe,Xinzhao Tong,Klas I. Udekwu,Klas I. Udekwu,Juan A. Ugalde,Brandon Valentine,Dimitar Vassilev,Elena M. Vayndorf,Thirumalaisamy P. Velavan,Jun Wu,María Mercedes Zambrano,Jifeng Zhu,Sibo Zhu,Christopher E. Mason,Natasha Abdullah,Marcos Abraao,Ait-hamlat Adel,Muhammad Afaq,Faisal Alquaddoomi,Ireen Alam,Gabriela E. Albuquerque,Alex Alexiev,Kalyn Ali,Lucia E. Alvarado-Arnez,Sarh Aly,Jennifer Amachee,Maria João Amorim,Majelia Ampadu,Muhammad Al-Fath Amran,Nala An,Watson Andrew,Harilanto Andrianjakarivony,Michael Angelov,Verónica Antelo,Catharine Aquino,Álvaro Aranguren,Luiza Ferreira de Araújo,Hitler Francois Vasquez Arevalo,Jenny Arevalo,Carme Arnan,Lucia Elena Alvarado Arnez,Fernanda Arredondo,Matthew Arthur,Freddy Asenjo,Thomas Saw Aung,Juliette Auvinet,Nuria Aventin,Sadaf Ayaz,Silva Baburyan,Abd-Manaaf Bakere,Katrin Bakhl,Thais Fernanda Bartelli,Erdenetsetseg Batdelger,François Baudon,Kevin Becher,Carla Bello,Médine Benchouaia,Hannah Benisty,Anne-Sophie Benoiston,Joseph Benson,Diego Benítez,Juliana S Bernardes,Denis Bertrand,Silvia Beurmann,Tristan Bitard-Feildel,Lucie Bittner,Christina Black,Guillaume Blanc,Brittany Blyther,Toni Bode,Julia Boeri,Bazartseren Boldgiv,Kevin Bolzli,Alexia Bordigoni,Ciro Borrelli,Sonia Bouchard,Jean-Pierre Bouly,Alicia Boyd,Gabriela P. Branco,Alessandra Breschi,Björn Brindefalk,Christian Brion,Alan Briones,Paulina Buczansla,Catherine Burke,Aszia Burrell,Alina Butova,Irvind Buttar,Jalia Bynoe,Sven Bönigk,Kari Oline Bøifot,Hiram Caballero,Xiao Wen Cai,Dayana Calderon,Angela Cantillo,Miguel Carbajo,Alessandra Carbone,Anais Cardenas,Katerine Carrillo,Laurie Casalot,Sofia Castro,Ana Valeria B Castro,Astred Castro,Ana Valeria Castro,Simone Cawthorne,Jonathan Cedillo,Salama Chaker,Jasna Chalangal,Allison Chan,Anastasia Chasapi,Starr Chatziefthimiou,Sreya Ray Chaudhuri,Akash Keluth Chavan,Francisco Chavez,Gregory Chem,Xiaoqing Chen,Michelle B. Chen,Jenn-Wei Chen,Ariel Chernomoretz,Allaeddine Chettouh,Daisy Cheung,Diana Chicas,Shirley Chiu,Hira Choudhry,Carl Chrispin,Kianna Ciaramella,Erika Cifuentes,Jake Cohen,David A. Coil,Sylvie Collin,Colleen Conger,Romain Conte,Flavia Corsi,Cecilia N. Cossio,Ana Flávia Costa,Delisia Cuebas,Bruno D'Alessandro,Katherine E. Dahlhausen,Aaron E. Darling,Pujita Das,Lucinda B. Davenport,Laurent David,Natalie R. Davidson,Gargi Dayama,Stéphane Delmas,Chris K. Deng,Chloé Dequeker,Alexandre Desert,Monika Devi,Felipe Segato Dezem,Clara N. Dias,Timothy Donahoe,Sonia Dorado,LaShonda Dorsey,Valeriia Dotsenko,Steven Du,Alexandra Dutan,Naya Eady,Jonathan A. Eisen,Miar Elaskandrany,Lennard Epping,Juan P. Escalera-Antezana,Cassie L. Ettinger,Iqra Faiz,Luice Fan,Nadine Farhat,Emile Faure,Fazlina Fauzi,Charlie Feigin,Skye Felice,Laís Pereira Ferreira,Gabriel Figueroa,Aubin Fleiss,Denisse Flores,Jhovana L. Velasco Flores,Marcos A. S. Fonseca,Jonathan Foox,Juan Carlos Forero,Aaishah Francis,Kelly French,Pablo Fresia,Jacob Friedman,Jaime J. Fuentes,Josephine Galipon,Mathilde Garcia,Laura Garcia,Catalina García,Annie Geiger,Samuel M. Gerner,Sonia L. Ghose,Dao Phuong Giang,Matías Giménez,Donato Giovannelli,Dedan Githae,Spyridon Gkotzis,Liliana Godoy,Samantha L. Goldman,Gaston H. Gonnet,Juana Gonzalez,Andrea Gonzalez,Camila Gonzalez-Poblete,Andrew N. Gray,Tranette Gregory,Charlotte Greselle,Sophie Guasco,Juan Guerra,Nika Gurianova,Wolfgang Haehr,Sebastien Halary,Felix Hartkopf,Arya Hawkins-Zafarnia,Nur Hazlin Hazrin-Chong,Eric Helfrich,Eva Hell,Tamera Henry,Samuel Hernandez,Pilar Lopez Hernandez,David Hess-Homeier,Lauren E. Hittle,Nghiem Xuan Hoan,Aliaksei Holik,Chiaki Homma,Irene Hoxie,Michael Huber,Elizabeth Humphries,Stephanie L. Hyland,Andrea Hässig,Roland Häusler,Nathalie Hüsser,Robert A. Petit,Badamnyambuu Iderzorig,Mizuki Igarashi,Shaikh B. Iqbal,Shino Ishikawa,Sakura Ishizuka,Sharah Islam,Riham Islam,Kohei Ito,Sota Ito,Takayuki Ito,Tomislav Ivankovic,Tomoki Iwashiro,Sarah S. Jackson,JoAnn Jacobs,Marisano James,Marianne Jaubert,Marie-Laure Jerier,Esmeralda Jiminez,Ayantu Jinfessa,Ymke De Jong,Hyun Woo Joo,Guilllaume Jospin,Takema Kajita,Affifah Saadah Ahmad Kassim,Nao Kato,Amrit Kaur,Inderjit Kaur,Fernanda de Souza Gomes Kehdy,Vedbar S. Khadka,Shaira Khan,Mahshid Khavari,Michelle Ki,Gina Kim,Hyung Jun Kim,Sangwan Kim,Ryan J. King,Giuseppe KoLoMonaco,Ellen Koag,Nadezhda Kobko-Litskevitch,Maryna Korshevniuk,Michael Kozhar,Jonas Krebs,Nanami Kubota,Andrii Kuklin,Sheelta S. Kumar,Rachel Kwong,Lawrence Kwong,Ingrid Lafontaine,Juliana Lago,Tsoi Ying Lai,Elodie Laine,Manolo Laiola,Olha Lakhneko,Isha Lamba,Gerardo de Lamotte,Romain Lannes,Eleonora De Lazzari,Madeline Leahy,Hyun Jung Lee,Yunmi Lee,Lucy Lee,Vincent Lemaire,Emily Leong,Dagmara Lewandowska,Chenhao Li,Weijun Liang,Moses Lin,Priscilla Lisboa,Anna Litskevitch,Eric Minwei Liu,Tracy W. Liu,Mayra Arauco Livia,Yui Him Lo,Sonia Losim,Manon Loubens,Jennifer Q. Lu,Olexandr Lykhenko,Simona Lysakova,Salah Mahmoud,Sara Abdul Majid,Natalka Makogon,Denisse Maldonado,Krizzy Mallari,Tathiane M. Malta,Maliha Mamun,Dimitri Manoir,German Marchandon,Natalia Marciniak,Sonia Marinovic,Brunna Marques,Nicole Mathews,Yuri Matsuzaki,Vincent Matthys,Madelyn May,Elias McComb,Annabelle Meagher,Adiell Melamed,Wayne Menary,Katterinne N. Mendez,Ambar Mendez,Irène Mauricette Mendy,Irene Meng,Ajay Menon,Mark Menor,Roy Meoded,Nancy Merino,Karishma Miah,Mathilde Mignotte,Tanja Miketic,Wilson Miranda,Athena Mitsios,Ryusei Miura,Kunihiko Miyake,Maria Domenica Moccia,Natasha Mohan,Mohammed Mohsin,Karobi Moitra,Mauricio Moldes,Laura Molina,Jennifer Molinet,Orgil-Erdene Molomjamts,Eftar Moniruzzaman,Sookwon Moon,Isabelle de Oliveira Moraes,Mario Moreno,Maritza S Mosella,Josef W. Moser,Christopher Mozsary,Amanda L. Muehlbauer,Oasima Muner,Muntaha Munia,Naimah Munim,Maureen Muscat,Tatjana Mustac,Cristina Muñoz,Francesca Nadalin,Areeg Naeem,Dorottya Nagy-Szakal,Mayuko Nakagawa,Ashanti Narce,Masaki Nasu,Irene González Navarrete,Hiba Naveed,Bryan Nazario,Narasimha Rao Nedunuri,Thomas Neff,Aida Nesimi,Wan Chiew Ng,Synti Ng,Gloria Nguyen,Elsy Mankah Ngwa,Agier Nicolas,Pierre Nicolas,Abdollahi Nika,Hosna Noorzi,Avigdor Nosrati,Diana N. Nunes,Kathryn O’Brien,Niamh B. O’Hara,Gabriella Oken,Rantimi A. Olawoyin,Javier Quilez Oliete,Kiara Olmeda,Tolulope Oluwadare,Itunu A. Oluwadare,Nils Ordioni,Jenessa Orpilla,Jacqueline Orrego,Melissa Ortega,Princess Osma,Israel O. Osuolale,Oluwatosin M. Osuolale,Mitsuki Ota,Francesco Oteri,Yuya Oto,Rachid Ounit,Christos A. Ouzounis,Subhamitra Pakrashi,Rachel Paras,Coral Pardo-Esté,Youngja Park,Paulina Pastuszek,Suraj Patel,Jananan Pathmanathan,Andrea Patrignani,Manuel Perez,Ante Peros,Sabrina Persaud,Anisia Peters,Adam Phillips,Lisbeth Pineda,Melissa Pool Pizzi,Alma Plaku,Alketa Plaku,Brianna Pompa-Hogan,María Gabriela Portilla,Leonardo Posada,Max Priestman,Bharath Prithiviraj,Sambhawa Priya,Phanthira Pugdeethosal,Catherine E. Pugh,Benjamin Pulatov,Angelika Pupiec,Kyrylo Pyrshev,Tao Qing,Saher Rahiel,Savlatjon Rahmatulloev,Kannan Rajendran,Aneisa Ramcharan,Adan Ramirez-Rojas,Shahryar Rana,Prashanthi Ratnanandan,Timothy D. Read,Hubert Rehrauer,Renee Richer,Alexis Rivera,Michelle Rivera,Alessandro Robertiello,Courtney Robinson,Paula Rodríguez,Nayra Aguilar Rojas,Paul Roldán,Anyelic Rosario,Sandra Roth,Maria del Mar Vivanco Ruiz,Stephen Eduard Boja Ruiz,Kaitlan Russell,Mariia Rybak,Thais S. Sabedot,Mahfuza Sabina,Ikuto Saito,Yoshitaka Saito,Gustavo Adolfo Malca Salas,Cecilia Salazar,Kaung Myat San,Jorge Sanchez,Khaliun Sanchir,Ryan Sankar,Paulo Thiago de Souza Santos,Zulena Saravi,Kai Sasaki,Yuma Sato,Masaki Sato,Seisuke Sato,Ryo Sato,Kaisei Sato,Nowshin Sayara,Steffen Schaaf,Oli Schacher,Anna-Lena M. Schinke,Ralph Schlapbach,Christian Schori,Jason R. Schriml,Felipe Segato,Felipe Sepúlveda,Marianna S. Serpa,Paola Florez de Sessions,Juan C. Severyn,Maheen Shakil,Sarah Shalaby,Aliyah Shari,Hyenah Shim,Hikaru Shirahata,Yuh Shiwa,Ophélie Da Silva,Jordana M. Silva,Gwenola Simon,Shaleni K. Singh,Kasia Sluzek,Rebecca Smith,Eunice So,Núria Andreu Somavilla,Yuya Sonohara,Nuno Rufino de Sousa,Camila P. E. de Souza,Jason Sperry,Nicolas Sprinsky,Stefan G. Stark,Antonietta La Storia,Kiyoshi Suganuma,Hamood Suliman,Jill Sullivan,Arif Asyraf Md Supie,Chisato Suzuki,Sora Takagi,Fumie Takahara,Naoya Takahashi,Kou Takahashi,Tomoki Takeda,Isabella Kuniko T. Takenaka,Soma Tanaka,Anyi Tang,Yuk Man Tang,Emilio Tarcitano,Andrea Tassinari,Mahdi Taye,Alexis Terrero,Eunice Thambiraja,Antonin Thiébaut,Sade Thomas,Andrew Maltez Thomas,Yuto Togashi,Takumi Togashi,Anna Tomaselli,Masaru Tomita,Itsuki Tomita,Oliver Toth,Nora C. Toussaint,Jennifer M. Tran,Catalina Truong,Stefan I. Tsonev,Kazutoshi Tsuda,Takafumi Tsurumaki,Michelle Tuz,Yelyzaveta Tymoshenko,Carmen Urgiles,Mariko Usui,Sophie Vacant,Laura E. Vann,Fabienne Velter,Valeria Ventorino,Patricia Vera-Wolf,Riccardo Vicedomini,Michael A. Suarez-Villamil,Sierra Vincent,Renee Vivancos-Koopman,Andrew Wan,Cindy Wang,Tomoro Warashina,Ayuki Watanabe,Samuel Weekes,Johannes Werner,David A. Westfall,Lothar H. Wieler,Michelle D. Williams,Silver A. Wolf,Brian W. Wong,Yan Ling Wong,Tyler Wong,Rasheena Wright,Tina Wunderlin,Ryota Yamanaka,Jingcheng Yang,Hirokazu Yano,George C. Yeh,Olena Yemets,Tetiana Yeskova,Shusei Yoshikawa,Laraib Zafar,Yang Zhang,Shu Zhang,Amy Zhang,Yuanting Zheng,Stas Zubenko +681 more
TL;DR: This paper presented a global atlas of 4,728 metagenomic samples from mass-transit systems in 60 cities over three years, representing the first systematic, worldwide catalog of the urban microbial ecosystem.