G
Gengxiong Wu
Publications - 8
Citations - 7883
Gengxiong Wu is an academic researcher. The author has contributed to research in topics: Sequence assembly & Phylogenomics. The author has an hindex of 6, co-authored 8 publications receiving 6675 citations.
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Journal ArticleDOI
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
Ruibang Luo,Binghang Liu,Yinlong Xie,Yinlong Xie,Zhenyu Li,Weihua Huang,Jianying Yuan,Guangzhu He,Yanxiang Chen,Qi Pan,Yunjie Liu,Jingbo Tang,Gengxiong Wu,Hao Zhang,Yujian Shi,Yong Liu,Chang Yu,Bo Wang,Yao Lu,Changlei Han,David W. Cheung,Siu-Ming Yiu,Shaoliang Peng,Zhu Xiao-qian,Guangming Liu,Xiangke Liao,Yingrui Li,Huanming Yang,Jian Wang,Tak-Wah Lam,Jun Wang +30 more
TL;DR: This work provides an updated assembly version of the 2008 Asian genome using SOAPdenovo2, a new algorithm design that reduces memory consumption in graph construction, resolves more repeat regions in contig assembly, increases coverage and length in scaffold construction, improves gap closing, and optimizes for large genome.
Journal ArticleDOI
Phylogenomics resolves the timing and pattern of insect evolution
Bernhard Misof,Shanlin Liu,Karen Meusemann,Ralph S. Peters,Alexander Donath,Christoph Mayer,Paul B. Frandsen,Jessica L. Ware,Tomas Flouri,Rolf G. Beutel,Oliver Niehuis,Malte Petersen,Fernando Izquierdo-Carrasco,Torsten Wappler,Jes Rust,Andre J. Aberer,Ulrike Aspöck,Ulrike Aspöck,Horst Aspöck,Daniela Bartel,Alexander Blanke,Simon Berger,Alexander Böhm,Thomas R. Buckley,Brett Calcott,Junqing Chen,Frank Friedrich,Makiko Fukui,Mari Fujita,Carola Greve,Peter Grobe,Shengchang Gu,Ying Huang,Lars S. Jermiin,Akito Y. Kawahara,Lars Krogmann,Martin Kubiak,Robert Lanfear,Robert Lanfear,Robert Lanfear,Harald Letsch,Yiyuan Li,Zhenyu Li,Jiguang Li,Haorong Lu,Ryuichiro Machida,Yuta Mashimo,Pashalia Kapli,Pashalia Kapli,Duane D. McKenna,Guanliang Meng,Yasutaka Nakagaki,José Luis Navarrete-Heredia,Michael Ott,Yanxiang Ou,Günther Pass,Lars Podsiadlowski,Hans Pohl,Björn M. von Reumont,Kai Schütte,Kaoru Sekiya,Shota Shimizu,Adam Slipinski,Alexandros Stamatakis,Alexandros Stamatakis,Wenhui Song,Xu Su,Nikolaus U. Szucsich,Meihua Tan,Xuemei Tan,Min Tang,Jingbo Tang,Gerald Timelthaler,Shigekazu Tomizuka,Michelle D. Trautwein,Xiaoli Tong,Toshiki Uchifune,Manfred Walzl,Brian M. Wiegmann,Jeanne Wilbrandt,Benjamin Wipfler,Thomas K. F. Wong,Qiong Wu,Gengxiong Wu,Yinlong Xie,Shenzhou Yang,Qing Yang,David K. Yeates,Kazunori Yoshizawa,Qing Zhang,Rui Zhang,Wenwei Zhang,Yunhui Zhang,Jing Zhao,Chengran Zhou,Lili Zhou,Tanja Ziesmann,Shijie Zou,Yingrui Li,Xun Xu,Yong Zhang,Huanming Yang,Jian Wang,Jun Wang,Karl M. Kjer,Xin Zhou +105 more
TL;DR: The phylogeny of all major insect lineages reveals how and when insects diversified and provides a comprehensive reliable scaffold for future comparative analyses of evolutionary innovations among insects.
Journal ArticleDOI
SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads
Yinlong Xie,Yinlong Xie,Gengxiong Wu,Jingbo Tang,Ruibang Luo,Jordan Patterson,Shanlin Liu,Weihua Huang,Guangzhu He,Shengchang Gu,Shengkang Li,Xin Zhou,Tak-Wah Lam,Yingrui Li,Xun Xu,Gane Ka-Shu Wong,Jun Wang +16 more
TL;DR: The conclusion is that SOAPdenovo-Trans provides higher contiguity, lower redundancy and faster execution, compared with two other popular transcriptome assemblers.
Posted Content
SOAPdenovo-Trans: De novo transcriptome assembly with short RNA-Seq reads
Yinlong Xie,Yinlong Xie,Gengxiong Wu,Jingbo Tang,Ruibang Luo,Jordan Patterson,Shanlin Liu,Weihua Huang,Guangzhu He,Shengchang Gu,Shengkang Li,Xin Zhou,Tak-Wah Lam,Yingrui Li,Xun Xu,Gane Ka-Shu Wong,Jun Wang +16 more
TL;DR: SOAPdenovo-Trans as mentioned in this paper is a de novo transcriptome assembler designed specifically for RNA-Seq that provides higher contiguity, lower redundancy, and faster execution.
Journal ArticleDOI
Erratum to "SOAPdenovo2: An empirically improved memory-efficient short-read de novo assembler" [GigaScience, (2012), 1, 18]
Ruibang Luo,Binghang Liu,Yinlong Xie,Zhenyu Li,Weihua Huang,Jianying Yuan,Guangzhu He,Yanxiang Chen,Qi Pan,Yunjie Liu,Jingbo Tang,Gengxiong Wu,Hao Zhang,Yujian Shi,Yong Liu,Chang Yu,Bo Wang,Yao Lu,Changlei Han,David W. Cheung,Siu-Ming Yiu,Shaoliang Peng,Zhu Xiao-qian,Guangming Liu,Xiangke Liao,Yingrui Li,Huanming Yang,Jian Wang,Tak-Wah Lam,Jun Wang +29 more
TL;DR: This research presents a novel probabilistic approach to estimating the response of the immune system to laser-spot assisted, 3D image recognition.