Gilles Bergametti

Bio: Gilles Bergametti is an academic researcher from Paris Diderot University. The author has contributed to research in topics: Mineral dust & Aeolian processes. The author has an hindex of 47, co-authored 147 publications receiving 12315 citations. Previous affiliations of Gilles Bergametti include Centre national de la recherche scientifique & University of Paris.

Global Iron Connections Between Desert Dust, Ocean Biogeochemistry, and Climate

Abstract: The environmental conditions of Earth, including the climate, are determined by physical, chemical, biological, and human interactions that transform and transport materials and energy. This is the "Earth system": a highly complex entity characterized by multiple nonlinear responses and thresholds, with linkages between disparate components. One important part of this system is the iron cycle, in which iron-containing soil dust is transported from land through the atmosphere to the oceans, affecting ocean biogeochemistry and hence having feedback effects on climate and dust production. Here we review the key components of this cycle, identifying critical uncertainties and priorities for future research.

Modeling the atmospheric dust cycle: 1. Design of a soil-derived dust emission scheme

Abstract: A soil-derived dust emission scheme has been designed to provide an explicit representation of the desert dust sources for the atmospheric transport models dealing with the simulation of the desert dust cycle. Two major factors characterizing the erodible surface are considered: (1) the size distribution of the erodible loose particles of the soil which controls the erosion threshold and the emission strength and (2) the surface roughness which imposes the efficient wind friction velocity acting on the erodible surface. These two parameters are included in a formulation of the threshold wind friction velocity by adapting a size-dependent parameterization proposed by Iversen and White (1982) and by applying to the rough erodible surfaces a drag partition scheme derived from Arya (1975). This parameterization of the threshold friction velocity has been included in an horizontal flux equation proposed by White (1979). This allows to attribute a specific production rate to each soil size range for each type of surface. The dust flux F is then considered as a fraction of the total horizontal flux G, the value of the ratio F/G being imposed, at this time, by the soil clay content. In summary, the computed mass fluxes depend on the soil size distribution, the roughness lengths, and the wind friction velocity. The different steps of this scheme have been independently validated by comparison with relevant experimental data. Globally, the agreement is satisfying, so that the dust fluxes could be retrieved with less uncertainties than those observed in previous simulations of the desert dust cycle.

Atmospheric global dust cycle and iron inputs to the ocean

Abstract: [1] Since iron is an important micronutrient, deposition of iron in mineral aerosols can impact the carbon cycle and atmospheric CO2. This paper reviews our current understanding of the global dust cycle and identifies future research needs. The global distribution of desert dust is estimated from a combination of observations of dust from in situ concentration, optical depth, and deposition data; observations from satellite; and global atmospheric models. The anthropogenically influenced portion of atmospheric desert dust flux is thought to be smaller than the natural portion, but is difficult to quantify due to the poorly understood response of desert dust to changes in climate, land use, and water use. The iron content of aerosols is thought to vary by a factor of 2, while the uncertainty in dust deposition is at least a factor of 10 in some regions due to the high spatial and temporal variability and limited observations. Importantly, we have a limited understanding of the processes by which relatively insoluble soil iron (typically ∼0.5% is soluble) becomes more soluble (1–80%) during atmospheric transport, but these processes could be impacted by anthropogenic emissions of sulfur or organic acids. In order to understand how humans will impact future iron deposition to the oceans, we need to improve our understanding of: iron deposition to remote oceans, iron chemistry in aerosols, how desert dust sources will respond to climate change, and how humans will impact the transport of bioavailable fraction of iron to the oceans.

Global distribution of atmospheric phosphorus sources, concentrations and deposition rates, and anthropogenic impacts

Abstract: A worldwide compilation of atmospheric total phosphorus (TP) and phosphate (PO4) concentration and deposition flux observations are combined with transport model simulations to derive the global distribution of concentrations and deposition fluxes of TP and PO4. Our results suggest that mineral aerosols are the dominant source of TP on a global scale (82%), with primary biogenic particles (12%) and combustion sources (5%) important in nondusty regions. Globally averaged anthropogenic inputs are estimated to be similar to 5 and 15% for TP and PO4, respectively, and may contribute as much as 50% to the deposition over the oligotrophic ocean where productivity may be phosphorus-limited. There is a net loss of TP from many (but not all) land ecosystems and a net gain of TP by the oceans (560 Gg P a(-1)). More measurements of atmospheric TP and PO4 will assist in reducing uncertainties in our understanding of the role that atmospheric phosphorus may play in global biogeochemistry.

Parametrization of the increase of the aeolian erosion threshold wind friction velocity due to soil moisture for arid and semi-arid areas

Abstract: . Large-scale simulation of the soil-derived dust emission in semi-arid regions needs to account for the influence of the soil moisture on the wind erosion threshold. Soil water retention consists of molecular adsorption on the soil grain surface and capillary forces between the grain. Interparticle capillary forces (characterized by the moisture tension) are the main factor responsible for the increase of the wind erosion threshold observed when the soil moisture increases. When the soil moisture content is close to but smaller than the maximum amount of adsorbed water, w' (depending on the soil texture), these capillary forces are considered as not strong enough to significantly increase the erosion threshold. An expression of the moisture tension as a function of soil moisture and w' is derived from retention curves. From this expression, a parametrization of the ratio of the wet to dry erosion thresholds has been developed as a function of soil moisture and soil texture. The coefficients of this parametrization have been determined by using experimental data from the literature. An empirical relationship between w' and soil clay content has been established. The erosion threshold ratios simulated for different soil textures were found to be in good agreement with the experimental data. Key words. Atmospheric composition and structure (Aerosols and particles) · Hydrology (soil moisture)

疟原虫var基因转换速率变化导致抗原变异[英]／Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A

Abstract: 抗原变异可使得多种致病微生物易于逃避宿主免疫应答。表达在感染红细胞表面的恶性疟原虫红细胞表面蛋白1（PfPMP1）与感染红细胞、内皮细胞、树突状细胞以及胎盘的单个或多个受体作用，在黏附及免疫逃避中起关键的作用。每个单倍体基因组var基因家族编码约60种成员，通过启动转录不同的var基因变异体为抗原变异提供了分子基础。

The Modern-Era Retrospective Analysis for Research and Applications, Version 2 (MERRA-2)

Abstract: The Modern-Era Retrospective Analysis for Research and Applications, version 2 (MERRA-2), is the latest atmospheric reanalysis of the modern satellite era produced by NASA’s Global Modeling and Assimilation Office (GMAO). MERRA-2 assimilates observation types not available to its predecessor, MERRA, and includes updates to the Goddard Earth Observing System (GEOS) model and analysis scheme so as to provide a viable ongoing climate analysis beyond MERRA’s terminus. While addressing known limitations of MERRA, MERRA-2 is also intended to be a development milestone for a future integrated Earth system analysis (IESA) currently under development at GMAO. This paper provides an overview of the MERRA-2 system and various performance metrics. Among the advances in MERRA-2 relevant to IESA are the assimilation of aerosol observations, several improvements to the representation of the stratosphere including ozone, and improved representations of cryospheric processes. Other improvements in the quality of M...

The Ensemble Kalman Filter: Theoretical formulation and practical implementation

Abstract: The purpose of this paper is to provide a comprehensive presentation and interpretation of the Ensemble Kalman Filter (EnKF) and its numerical implementation. The EnKF has a large user group, and numerous publications have discussed applications and theoretical aspects of it. This paper reviews the important results from these studies and also presents new ideas and alternative interpretations which further explain the success of the EnKF. In addition to providing the theoretical framework needed for using the EnKF, there is also a focus on the algorithmic formulation and optimal numerical implementation. A program listing is given for some of the key subroutines. The paper also touches upon specific issues such as the use of nonlinear measurements, in situ profiles of temperature and salinity, and data which are available with high frequency in time. An ensemble based optimal interpolation (EnOI) scheme is presented as a cost-effective approach which may serve as an alternative to the EnKF in some applications. A fairly extensive discussion is devoted to the use of time correlated model errors and the estimation of model bias.

Environmental characterization of global sources of atmospheric soil dust identified with the nimbus 7 total ozone mapping spectrometer (toms) absorbing aerosol product

Abstract: [1] We use the Total Ozone Mapping Spectrometer (TOMS) sensor on the Nimbus 7 satellite to map the global distribution of major atmospheric dust sources with the goal of identifying common environmental characteristics The largest and most persistent sources are located in the Northern Hemisphere, mainly in a broad “dust belt” that extends from the west coast of North Africa, over the Middle East, Central and South Asia, to China There is remarkably little large-scale dust activity outside this region In particular, the Southern Hemisphere is devoid of major dust activity Dust sources, regardless of size or strength, can usually be associated with topographical lows located in arid regions with annual rainfall under 200–250 mm Although the source regions themselves are arid or hyperarid, the action of water is evident from the presence of ephemeral streams, rivers, lakes, and playas Most major sources have been intermittently flooded through the Quaternary as evidenced by deep alluvial deposits Many sources are associated with areas where human impacts are well documented, eg, the Caspian and Aral Seas, Tigris-Euphrates River Basin, southwestern North America, and the loess lands in China Nonetheless, the largest and most active sources are located in truly remote areas where there is little or no human activity Thus, on a global scale, dust mobilization appears to be dominated by natural sources Dust activity is extremely sensitive to many environmental parameters The identification of major sources will enable us to focus on critical regions and to characterize emission rates in response to environmental conditions With such knowledge we will be better able to improve global dust models and to assess the effects of climate change on emissions in the future It will also facilitate the interpretation of the paleoclimate record based on dust contained in ocean sediments and ice cores

Couplings between changes in the climate system and biogeochemistry

Abstract: Couplings Between Changes in the Climate System and Biogeochemistry Coordinating Lead Authors: Kenneth L. Denman (Canada), Guy Brasseur (USA, Germany) Lead Authors: Amnat Chidthaisong (Thailand), Philippe Ciais (France), Peter M. Cox (UK), Robert E. Dickinson (USA), Didier Hauglustaine (France), Christoph Heinze (Norway, Germany), Elisabeth Holland (USA), Daniel Jacob (USA, France), Ulrike Lohmann (Switzerland), Srikanthan Ramachandran (India), Pedro Leite da Silva Dias (Brazil), Steven C. Wofsy (USA), Xiaoye Zhang (China) Contributing Authors: D. Archer (USA), V. Arora (Canada), J. Austin (USA), D. Baker (USA), J.A. Berry (USA), R. Betts (UK), G. Bonan (USA), P. Bousquet (France), J. Canadell (Australia), J. Christian (Canada), D.A. Clark (USA), M. Dameris (Germany), F. Dentener (EU), D. Easterling (USA), V. Eyring (Germany), J. Feichter (Germany), P. Friedlingstein (France, Belgium), I. Fung (USA), S. Fuzzi (Italy), S. Gong (Canada), N. Gruber (USA, Switzerland), A. Guenther (USA), K. Gurney (USA), A. Henderson-Sellers (Switzerland), J. House (UK), A. Jones (UK), C. Jones (UK), B. Karcher (Germany), M. Kawamiya (Japan), K. Lassey (New Zealand), C. Le Quere (UK, France, Canada), C. Leck (Sweden), J. Lee-Taylor (USA, UK), Y. Malhi (UK), K. Masarie (USA), G. McFiggans (UK), S. Menon (USA), J.B. Miller (USA), P. Peylin (France), A. Pitman (Australia), J. Quaas (Germany), M. Raupach (Australia), P. Rayner (France), G. Rehder (Germany), U. Riebesell (Germany), C. Rodenbeck (Germany), L. Rotstayn (Australia), N. Roulet (Canada), C. Sabine (USA), M.G. Schultz (Germany), M. Schulz (France, Germany), S.E. Schwartz (USA), W. Steffen (Australia), D. Stevenson (UK), Y. Tian (USA, China), K.E. Trenberth (USA), T. Van Noije (Netherlands), O. Wild (Japan, UK), T. Zhang (USA, China), L. Zhou (USA, China) Review Editors: Kansri Boonpragob (Thailand), Martin Heimann (Germany, Switzerland), Mario Molina (USA, Mexico) This chapter should be cited as: Denman, K.L., G. Brasseur, A. Chidthaisong, P. Ciais, P.M. Cox, R.E. Dickinson, D. Hauglustaine, C. Heinze, E. Holland, D. Jacob, U. Lohmann, S Ramachandran, P.L. da Silva Dias, S.C. Wofsy and X. Zhang, 2007: Couplings Between Changes in the Climate System and Biogeochemistry. In: Climate Change 2007: The Physical Science Basis. Contribution of Working Group I to the Fourth Assessment Report of the Intergovernmental Panel on Climate Change [Solomon, S., D. Qin, M. Manning, Z. Chen, M. Marquis, K.B. Averyt, M.Tignor and H.L. Miller (eds.)]. Cambridge University Press, Cambridge, United Kingdom and New York, NY, USA.