Gui-Rong Liu

Bio: Gui-Rong Liu is an academic researcher from University of Cincinnati. The author has contributed to research in topics: Finite element method & Smoothed finite element method. The author has an hindex of 95, co-authored 595 publications receiving 36641 citations. Previous affiliations of Gui-Rong Liu include Institute of High Performance Computing Singapore & Massachusetts Institute of Technology.

Smoothed Particle Hydrodynamics: A Meshfree Particle Method

Abstract: SPH Concept and Essential Formulation Constructing Smoothing Functions SPH for General Dynamic Fluid Flows Discontinuous SPH (DSPH) SPH for Simulating Explosions SPH for Underwater Explosion Shock Simulation SPH for Hydrodynamics with Material Strength Coupling SPH with Molecular Dynamics for Multiple Scale Simulations Computer Implementation of SPH and a 3D SPH Code.

Mesh Free Methods: Moving Beyond the Finite Element Method

Abstract: Preliminaries Physical Problems in Engineering Solid Mechanics: A Fundamental Engineering Problem Numerical Techniques: Practical Solution Tools Defining Meshfree Methods Need for Meshfree Methods The Ideas of Meshfree Methods Basic Techniques for Meshfree Methods Outline of the Book Some Notations and Default Conventions Remarks Meshfree Shape Function Construction Basic Issues for Shape Function Construction Smoothed Particle Hydrodynamics Approach Reproducing Kernel Particle Method Moving Least Squares Approximation Point Interpolation Method Radial PIM Radial PIM with Polynomial Reproduction Weighted Least Square (WLS) Approximation Polynomial PIM with Rotational Coordinate Transformation Comparison Study via Examples Compatibility Issues: An Analysis Other Methods Function Spaces for Meshfree Methods Function Spaces Useful Spaces in Weak Formulation G Spaces: Definition G1h Spaces: Basic Properties Error Estimation Concluding Remarks Strain Field Construction Why Construct Strain Field? Historical Notes How to Construct? Admissible Conditions for Constructed Strain Fields Strain Construction Techniques Concluding Remarks Weak and Weakened Weak Formulations Introduction to Strong and Weak Forms Weighted Residual Method A Weak Formulation: Galerkin A Weakened Weak Formulation: GS-Galerkin The Hu-Washizu Principle The Hellinger-Reissner Principle The Modified Hellinger-Reissner Principle Single-Field Hellinger-Reissner Principle The Principle of Minimum Complementary Energy The Principle of Minimum Potential Energy Hamilton's Principle Hamilton's Principle with Constraints Galerkin Weak Form Galerkin Weak Form with Constraints A Weakened Weak Formulation: SC-Galerkin Parameterized Mixed Weak Form Concluding Remarks Element Free Galerkin Method EFG Formulation with Lagrange Multipliers EFG with Penalty Method Summary Meshless Local Petrov-Galerkin Method MLPG Formulation MLPG for Dynamic Problems Concluding Remarks Point Interpolation Methods Node-Based Smoothed Point Interpolation Method (NS-PIM) NS-PIM Using Radial Basis Functions (NS-RPIM) Upper Bound Properties of NS-PIM and NS-RPIM Edge-Based Smoothed Point Interpolation Methods (ES-PIMs) A Combined ES/NS Point Interpolation Methods (ES/NS-PIM) Strain-Constructed Point Interpolation Method (SC-PIM) A Comparison Study Summary Meshfree Methods for Fluid Dynamics Problem Introduction Navier-Stokes Equations Smoothed Particle Hydrodynamics Method Gradient Smoothing Method (GSM) Adaptive Gradient Smoothing Method (A-GSM) A Discussion on GSM for Incompressible Flows Other Improvements on GSM Meshfree Methods for Beams PIM Shape Function for Thin Beams Strong Form Equations Weak Formulation: Galerkin Formulation A Weakened Weak Formulation: GS-Galerkin Three Models Formulation for NS-PIM for Thin Beams Formulation for Dynamic Problems Numerical Examples for Static Analysis Numerical Examples: Upper Bound Solution Numerical Examples for Free Vibration Analysis Concluding Remarks Meshfree Methods for Plates Mechanics for Plates EFG Method for Thin Plates EFG Method for Thin Composite Laminates EFG Method for Thick Plates ES-PIM for Plates Meshfree Methods for Shells EFG Method for Spatial Thin Shells EFG Method for Thick Shells ES-PIM for Thick Shells Summary Boundary Meshfree Methods RPIM Using Polynomial Basis RPIM Using Radial Function Basis Remarks Meshfree Methods Coupled with Other Methods Coupled EFG/BEM Coupled EFG and Hybrid BEM Remarks Meshfree Methods for Adaptive Analysis Triangular Mesh and Integration Cells Node Numbering: A Simple Approach Bucket Algorithm for Node Searching Relay Model for Domains with Irregular Boundaries Techniques for Adaptive Analysis Concluding Remarks MFree2D(c) Overview Techniques Used in MFree2D Preprocessing in MFree2D Postprocessing in MFree2D Index References appear at the end of each chapter.

Smoothed Particle Hydrodynamics (SPH): an Overview and Recent Developments

Abstract: Smoothed particle hydrodynamics (SPH) is a meshfree particle method based on Lagrangian formulation, and has been widely applied to different areas in engineering and science. This paper presents an overview on the SPH method and its recent developments, including (1) the need for meshfree particle methods, and advantages of SPH, (2) approximation schemes of the conventional SPH method and numerical techniques for deriving SPH formulations for partial differential equations such as the Navier-Stokes (N-S) equations, (3) the role of the smoothing kernel functions and a general approach to construct smoothing kernel functions, (4) kernel and particle consistency for the SPH method, and approaches for restoring particle consistency, (5) several important numerical aspects, and (6) some recent applications of SPH. The paper ends with some concluding remarks.

An Introduction to Meshfree Methods and Their Programming

Abstract: This book aims to present meshfree methods in a friendly and straightforward manner, so that beginners can very easily understand, comprehend, program, implement, apply and extend these methods. It provides first the fundamentals of numerical analysis that are particularly important to meshfree methods. Typical meshfree methods, such as EFG, RPIM, MLPG, LRPIM, MWS and collocation methods are then introduced systematically detailing the formulation, numerical implementation and programming. Many well-tested computer source codes developed by the authors are attached with useful descriptions. The application of the codes can be readily performed using the examples with input and output files given in table form. These codes consist of most of the basic meshfree techniques, and can be easily extended to other variations of more complex procedures of meshfree methods. Readers can easily practice with the codes provided to effective learn and comprehend the basics of meshfree methods.

A point interpolation meshless method based on radial basis functions

Abstract: A point interpolation meshless method is proposed based on combining radial and polynomial basis functions. Involvement of radial basis functions overcomes possible singularity associated with the meshless methods based on only the polynomial basis. This non-singularity is useful in constructing well-performed shape functions. Furthermore, the interpolation function obtained passes through all scattered points in an influence domain and thus shape functions are of delta function property. This makes the implementation of essential boundary conditions much easier than the meshless methods based on the moving least-squares approximation. In addition, the partial derivatives of shape functions are easily obtained, thus improving computational efficiency. Examples on curve/surface fittings and solid mechanics problems show that the accuracy and convergence rate of the present method is high. Copyright © 2002 John Wiley & Sons, Ltd.

Fast parallel algorithms for short-range molecular dynamics

Abstract: Three parallel algorithms for classical molecular dynamics are presented. The first assigns each processor a fixed subset of atoms; the second assigns each a fixed subset of inter-atomic forces to compute; the third assigns each a fixed spatial region. The algorithms are suitable for molecular dynamics models which can be difficult to parallelize efficiently—those with short-range forces where the neighbors of each atom change rapidly. They can be implemented on any distributed-memory parallel machine which allows for message-passing of data between independently executing processors. The algorithms are tested on a standard Lennard-Jones benchmark problem for system sizes ranging from 500 to 100,000,000 atoms on several parallel supercomputers--the nCUBE 2, Intel iPSC/860 and Paragon, and Cray T3D. Comparing the results to the fastest reported vectorized Cray Y-MP and C90 algorithm shows that the current generation of parallel machines is competitive with conventional vector supercomputers even for small problems. For large problems, the spatial algorithm achieves parallel efficiencies of 90% and a 1840-node Intel Paragon performs up to 165 faster than a single Cray C9O processor. Trade-offs between the three algorithms and guidelines for adapting them to more complex molecular dynamics simulations are also discussed.

疟原虫var基因转换速率变化导致抗原变异[英]／Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A

Abstract: 抗原变异可使得多种致病微生物易于逃避宿主免疫应答。表达在感染红细胞表面的恶性疟原虫红细胞表面蛋白1（PfPMP1）与感染红细胞、内皮细胞、树突状细胞以及胎盘的单个或多个受体作用，在黏附及免疫逃避中起关键的作用。每个单倍体基因组var基因家族编码约60种成员，通过启动转录不同的var基因变异体为抗原变异提供了分子基础。

Ferromagnetic materials

Abstract: In this chapter, we will restrict our attention to the ferrites and a few other closely related materials. The great interest in ferrites stems from their unique combination of a spontaneous magnetization and a high electrical resistivity. The observed magnetization results from the difference in the magnetizations of two non-equivalent sub-lattices of the magnetic ions in the crystal structure. Materials of this type should strictly be designated as “ferrimagnetic” and in some respects are more closely related to anti-ferromagnetic substances than they are to ferromagnetics in which the magnetization results from the parallel alignment of all the magnetic moments present. We shall not adhere to this special nomenclature except to emphasize effects, which are due to the existence of the sub-lattices.