H
Hongbin Liu
Researcher at Scripps Research Institute
Publications - 14
Citations - 4229
Hongbin Liu is an academic researcher from Scripps Research Institute. The author has contributed to research in topics: Sperm & Biology. The author has an hindex of 9, co-authored 11 publications receiving 4084 citations. Previous affiliations of Hongbin Liu include Agilent Technologies.
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Journal ArticleDOI
A Model for Random Sampling and Estimation of Relative Protein Abundance in Shotgun Proteomics
TL;DR: A linear dynamic range over 2 orders of magnitude is demonstrated by using the number of spectra (spectral sampling) acquired for each protein by the data-dependent acquisition of peptides eluting into the mass spectrometer.
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Dissection of the mammalian midbody proteome reveals conserved cytokinesis mechanisms.
Ahna R. Skop,Ahna R. Skop,Hongbin Liu,John R. Yates,Barbara J Meyer,Barbara J Meyer,Rebecca Heald +6 more
TL;DR: Functional dissection of the midbody demonstrated the importance of lipid rafts and vesicle trafficking pathways in cytokinesis, and the utilization of common membrane cytoskeletal components in diverse morphogenetic events in the cleavage furrow, the germline, and neurons.
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A Correlation Algorithm for the Automated Quantitative Analysis of Shotgun Proteomics Data
TL;DR: A computer program called RelEx is described, which uses a least-squares regression for the calculation of the peptide ion current ratios from the mass spectrometry-derived ion chromatograms, and which improves the accuracy of the quantitative measurement by 32 +/- 4%.
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Formation and composition of the Bacillus anthracis endospore
Hongbin Liu,Nicholas H. Bergman,Brendan Thomason,Shamira J. Shallom,Alyson Hazen,Joseph Crossno,David A. Rasko,Jacques Ravel,Timothy D. Read,Scott N. Peterson,John R. Yates,Philip C. Hanna +11 more
TL;DR: Comparison of data sets revealed that while the genes responsible for assembly and maturation of the spore are tightly regulated in discrete stages, many of the components ultimately found in theSpore are expressed throughout and even before sporulation, suggesting that gene expression during sporulation may be mainly related to the physical construction of the Spore, rather than synthesis of eventual spore content.
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Sperm chromatin proteomics identifies evolutionarily conserved fertility factors
Diana S. Chu,Hongbin Liu,Hongbin Liu,Paola Nix,Paola Nix,Tammy F. Wu,Edward J. Ralston,Edward J. Ralston,John R. Yates,Barbara J Meyer,Barbara J Meyer +10 more
TL;DR: The strategy to find fertility factors conserved from C. elegans to mammals achieved its goal: of mouse gene knockouts corresponding to nematode proteins, 37% (7/19) cause male sterility and provides significant opportunity to identify causes of male infertility and targets for male contraceptives.