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Hsiu-Ping Liu

Other affiliations: Missouri State University
Bio: Hsiu-Ping Liu is an academic researcher from University of Denver. The author has contributed to research in topics: Pyrgulopsis & Monophyly. The author has an hindex of 11, co-authored 14 publications receiving 440 citations. Previous affiliations of Hsiu-Ping Liu include Missouri State University.

Papers
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TL;DR: The finding that P. micrococcus contains multiple, genetically distinct and geographically restricted lineages suggests that diversification within this highly speciose aquatic genus has been structured in large part by the operation of terrestrial barriers to gene flow.
Abstract: We analysed cytochrome c oxidase subunit I and NADH dehydrogenase subunit I sequence variation among 29 populations of a widely ranging southwestern springsnail (Pyrgulopsis micrococcus) and 18 regional congeners. Cladistic analyses of these sequences depict P. micrococcus as a polyphyletic composite of five well-supported clades. Sequence divergences among these clades and subclades imply the possible occurrence of as many as seven or eight cryptic species in addition to P. micrococcus. Our finding that P. micrococcus contains multiple, genetically distinct and geographically restricted lineages suggests that diversification within this highly speciose aquatic genus has been structured in large part by the operation of terrestrial barriers to gene flow. However, these sequence data also indicate that recent dispersal among hydrographically separated areas has occurred within one of these lineages, which we attribute to passive transport on migratory waterbirds.

102 citations

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TL;DR: Maximum parsimony analysis of a 601-base-pair sequence from the mitochondrial COI gene did not support monophyly of the genus Tryonia nor its subgenus Paupertryonia, but a clade composed of the type species of Tryonia and 16 congeners was strongly supported by the COI data and congruent with recently discovered variation in female genitalic morphology.

60 citations

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TL;DR: The results indicate that penial morphologies used to define species groups of Pyrgulopsis have been subject to striking convergence throughout the West, suggesting another compelling facet of the radiation of these snails.

56 citations

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TL;DR: A molecular phylogeny indicates that the Natricola clade is restricted to the modern Snake-Columbia River Basin and the Oregon Lakes region whereas northern California populations previously assigned to this subgenus belong to other lineages.

39 citations

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TL;DR: The phylogeny suggests that upper Sacramento River clades originated as a result of late Neogene separation of this basin from neighbouring regions (northwestern Great Basin, Klamath River basin), which is consistent with previous biogeographical hypotheses based on the distributions of fishes.

39 citations


Cited by
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TL;DR: A fully ranked, hierarchical classification summarizes recent advances in the phylogeny of the Gastropoda and Monoplacophora.
Abstract: 2,604 names at the rank of subtribe, tribe, subfamily, family and superfamily have been proposed for Recent and fossil gastropods, and another 35 for monoplacophorans. All names are listed in a nomenclator giving full bibliographical reference, date of publication, typification, and their nomenclatural availability and validity under the International Code of Zoological Nomenclature. Another 790 names, established for categories above the familygroup (infraorder to subclass) are listed separately. A fully ranked, hierarchical classification summarizes recent advances in the phylogeny of the Gastropoda and Monoplacophora. In all, the classification recognizes as valid a total of 721 gastropod families, of which 245 are known exclusively as fossils and 476 occur in the Recent with or without a fossil record; and 20 monoplacophoran families, of which 1 only occurs as Recent.Nomenclatural acts in this work: Amberleya bathonica Cox & Arkell, 1950, fixed as type species of Amberleya J. Morris & Lycett, 1851, under Art. 70.3; Ampezzopleura tenuis Nutzel, 1998, fixed as type species of Ampezzopleura Bandel, 1991, under Art. 70.3; Proserpina nitida G. B. Sowerby II, 1839, designated type species of Despoena Newton, 1891; Buccinum glabratum Linnaeus, 1758, designated type species of Dipsaccus H. Adams & A. Adams, 1853; Murex ficus Linnaeus, 1758, designated type species of Ficula Swainson, 1835; Oncomelania hupensis Gredler, 1881, designated type species of Hemibia Heude, 1890; Murex metaxa Delle Chiaje, 1828, fixed as type species of Metaxia Monterosato, 1884 under Art. 70.3; Neridomus anglicus Cox & Arkell, 1950, fixed as type species of Neridomus J. Morris & Lycett, 1851, under Art. 70.3; Navicella clypeolum Recluz, 1843, designated type species of Orthopoma Gray, 1868; Trochus viadrinus M. Schmidt, 1905, fixed as type species of Parataphrus Chavan, 1954 under Art. 70.3; Helix pomatia Linnaeus, 1758, designated type species of Pentataenia A. Schmidt, 1855; Flammulina ponsonbyi Suter, 1897, fixed as type species of Phenacohelix Suter, 1892, under Art. 70.3; Cyrtolites corniculum Eichwald, 1860, fixed as type species of Pollicina Koken, 1895, under Art. 70.3; Purpurina elegantula d'Orbigny, 1850, designated as type species of Purpurina d'Orbigny, 1850, and lectotype of Turbo bellona d'Orbigny, 1850, designated as neotype of Purpurina elegantula; Pyramidella minuscula Monterosato, 1880, fixed as type species of Tiberia Jeffreys, 1884, under Art. 70.3; Cyclostoma delicatum Philippi, 1844, fixed as type species of Trachysma G. O. Sars, 1878, under Art. 70.3; Helix elegans Gmelin, 1791, fixed as type species of Trochoidea T. Brown, 1827, under Art. 70.3; Turritellopsis stimpsoni Dall, 1919, fixed as type species of Turritellopsis G. O. Sars, 1878, under Art. 70.3; Fusus averillii Gabb, 1864, fixed as type species of Volutoderma Gabb, 1876, under Art. 70.3; Voluta pepo Lightfoot, 1786, fixed as type species of Yetus Bowdich, 1822. Curnonidae d'Udekem d'Acoz, nom. nov., and Curnon d'Udekem d'Acoz, nom. nov., are established for Charcotiidae Odhner, 1926, and Charcotia Vayssiere, 1906, (between 27 March and 1 May), non Charcotia Chevreux, 1906 (January) [Amphipoda]; Yuopisthonematidae Nutzel, nom. nov., and Yuopisthonema Nutzel, nom. nov., are established for Opisthonematidae Yu, 1976, and Opisthonema Yu, 1974, non Gill, 1862 [Pisces]. The new family-group name Burnupiidae Albrecht is established in this work; and the names Scolodontina and Orthalicoidei are first used here to denote, respectively, a suborder containing the family Scolodontidae, and an infraorder containing the superfamily Orthalicoidea.

399 citations

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TL;DR: This study employed DNA barcoding to examine Hyalella, a taxonomically difficult genus of amphipod crustaceans from sites in the southern Great Basin of California and Nevada, USA, and revealed extraordinary levels of cryptic diversity and endemism.
Abstract: DNA barcoding has revealed unrecognized species in several animal groups. In this study we have employed DNA barcoding to examine Hyalella, a taxonomically difficult genus of amphipod crustaceans, from sites in the southern Great Basin of California and Nevada, USA. We assessed the extent of species diversity using a species screening threshold (SST) set at 10 times the average intrapopulation cytochrome c oxidase subunit I (COI) haplotype divergence. Despite the fact that this threshold approach is more conservative in delineating provisional species than the phylogenetic species concept, our analyses revealed extraordinary levels of cryptic diversity and endemism. The SST discriminated two provisional species within Hyalella sandra, and 33 provisional species within Hyalella azteca. COI nucleotide divergences among these provisional species ranged from 4.4% to 29.9%. These results have important implications for the conservation of life in desert springs - habitats that are threatened as a result of groundwater over-exploitation.

349 citations

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TL;DR: Comparison of modern to background extinction rates reveals that gastropods have the highest modern extinction rate yet observed, 9,539 times greater than background rates.
Abstract: This is the first American Fisheries Society conservation assessment of freshwater gastropods (snails) from Canada and the United States by the Gastropod Subcommittee (Endangered Species Committee). This review covers 703 species representing 16 families and 93 genera, of which 67 species are considered extinct, or possibly extinct, 278 are endangered, 102 are threatened, 73 are vulnerable, 157 are currently stable, and 26 species have uncertain taxonomic status. Of the entire fauna, 74% of gastropods are imperiled (vulnerable, threatened, endangered) or extinct, which exceeds imperilment levels in fishes (39%) and crayfishes (48%) but is similar to that of mussels (72%). Comparison of modern to background extinction rates reveals that gastropods have the highest modern extinction rate yet observed, 9,539 times greater than background rates. Gastropods are highly susceptible to habitat loss and degradation, particularly narrow endemics restricted to a single spring or short stream reaches. Compil...

172 citations

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TL;DR: Morphological characters in 33 Balkan rissooid genera, including shell macrocharacters, protoconch sculpture, soft part morphology and pigmentation, radulae, stomach, female reproductive organs, male reproductive organs are discussed and illustrated.
Abstract: Morphological characters in 33 Balkan rissooid genera (Adriohydrobia, Adrioinsulana, Alzoniella, Anagastina, Belgrandiella, Bithynia, Boleana, Bythinella, Bythiospeum, Daphniola, Dianella, Emmericia, Graecorientalia, Graziana, Grossuana, Hauffenia, Heleobia, Horatia, Hydrobia, Islamia, Lithoglyphus, Litthabitella, Marstoniopsis, Orientalina, Paladilhiopsis, Parabythinella, Pontobelgrandiella, Pseudamnicola, Pseudobithynia, Pyrgula, Sadleriana, Trichonia, Ventrosia) are discussed and illustrated based on the literature and, where necessary, on the presented additional data. These include shell macrocharacters, protoconch sculpture, soft part morphology and pigmentation, radulae, stomach, female reproductive organs, male reproductive organs. Based on partial sequences of the ribosomal 18S RNA gene, a molecular phylogeny is presented for all the genera, and based on fragments of CO1 gene in mitochondrial DNA, for all except six genera. Based on the Adams consensus tree the two gene phylogenies are summarised and systematics of the group is proposed. Adrioinsulana is considered a junior synonym of Pseudamnicola; Parabythinella a junior synonym of Marstoniopsis; a new name: Radomaniola n. gen. is proposed as a replacement name for the preoccupied Orientalina. Litthabitella, morphologically and molecularly distinct from the hydrobioids, probably belongs to the Assimineidae. Marstoniopsis belongs to the Amnicolidae, Bythinella to Bythinellidae, Lithoglyphus to Lithoglyphidae, Heleobia to Cochliopidae, Bithynia and Parabithynia to Bithyniidae, Emmericia to Emmericiidae. Paladilhiopsis and Bythiospeum belong to the Moitessieriidae, there being no reason for homologising the two genera. All the other genera belong to the monophyletic family Hydrobiidae, within which two subfamilies can be distinguished: Hydrobiinae and Sadlerianinae. The latter includes mostly very closely related genera, which makes splitting of this subfamily into more groups of this rank unjustified. The phylogeny of the molecular characters is mapped on two molecular trees. The caecal appendix on the stomach, reduction of the basal cusps on the rhachis and the so called “spermathecal duct” evolved parallelly, and are thus homoplastic. The network of pores on the protoconch and the flagellum seem to be uniquely derived. The seminal receptacles and lobes on the penis seem to be phylogenetically old, not prone to changes and rather useful in phylogeny reconstruction. The morphologically inferred relationships of Emmericiidae and the systematic position of the two species of Parabythinella are discussed in Appendix 2 and Appendix 3, respectively. Destroyed type localities of Balkan rissooids are listed in Appendix 4.

121 citations

Journal ArticleDOI
TL;DR: The results indicate that all three of the alignment strategies that were used resulted in phylogenies having similar signal levels, however, there was a slight advantage to using structural alignment for inferring family-level relationships.

107 citations