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Ian Sillitoe
Researcher at University College London
Publications - 76
Citations - 10496
Ian Sillitoe is an academic researcher from University College London. The author has contributed to research in topics: Protein domain & Biology. The author has an hindex of 38, co-authored 66 publications receiving 7997 citations.
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Journal ArticleDOI
InterPro in 2017-beyond protein family and domain annotations
Robert D. Finn,Teresa K. Attwood,Patricia C. Babbitt,Alex Bateman,Peer Bork,Alan Bridge,Hsin-Yu Chang,Zsuzsanna Dosztányi,Sara El-Gebali,Matthew Fraser,Julian Gough,David R. Haft,Gemma L. Holliday,Hongzhan Huang,Xiaosong Huang,Ivica Letunic,Rodrigo Lopez,Shennan Lu,Aron Marchler-Bauer,Huaiyu Mi,Jaina Mistry,Darren A. Natale,Marco Necci,Gift Nuka,Christine A. Orengo,Youngmi Park,Sebastien Pesseat,Damiano Piovesan,Simon C. Potter,Neil D. Rawlings,Nicole Redaschi,Lorna Richardson,Catherine Rivoire,Amaia Sangrador-Vegas,Christian J. A. Sigrist,Ian Sillitoe,Ben Smithers,Silvano Squizzato,Granger G. Sutton,Narmada Thanki,Paul Thomas,Silvio C. E. Tosatto,Cathy H. Wu,Ioannis Xenarios,Lai-Su L. Yeh,Siew Yit Young,Alex L. Mitchell +46 more
TL;DR: Recent developments with InterPro are reported, including the addition of two new databases, and the functionality to include residue-level annotation and prediction of intrinsic disorder, which enrich the annotations provided by InterPro, increase the overall number of residues annotated and allow more specific functional inferences.
Journal ArticleDOI
The InterPro protein families database: the classification resource after 15 years
Alex L. Mitchell,Hsin-Yu Chang,Louise C. Daugherty,Matthew Fraser,Sarah Hunter,Rodrigo Lopez,Craig McAnulla,Conor McMenamin,Gift Nuka,Sebastien Pesseat,Amaia Sangrador-Vegas,Maxim Scheremetjew,Claudia Rato,Siew-Yit Yong,Alex Bateman,Marco Punta,Teresa K. Attwood,Christian J. A. Sigrist,Nicole Redaschi,Catherine Rivoire,Ioannis Xenarios,Daniel Kahn,Dominique Guyot,Peer Bork,Ivica Letunic,Julian Gough,Matt E. Oates,Daniel H. Haft,Hongzhan Huang,Darren A. Natale,Cathy H. Wu,Christine A. Orengo,Ian Sillitoe,Huaiyu Mi,Paul Thomas,Robert D. Finn +35 more
TL;DR: The new domain architecture search tool is described and the process of mapping of Gene Ontology terms to InterPro is outlined, and the challenges faced by the resource given the explosive growth in sequence data in recent years are discussed.
Journal ArticleDOI
InterPro in 2019: improving coverage, classification and access to protein sequence annotations.
Alex L. Mitchell,Teresa K. Attwood,Patricia C. Babbitt,Matthias Blum,Peer Bork,Alan Bridge,Shoshana D. Brown,Hsin-Yu Chang,Sara El-Gebali,Matthew Fraser,Julian Gough,David R. Haft,Hongzhan Huang,Ivica Letunic,Rodrigo Lopez,Aurelien Luciani,Fábio Madeira,Aron Marchler-Bauer,Huaiyu Mi,Darren A. Natale,Marco Necci,Marco Necci,Gift Nuka,Christine A. Orengo,Arun Prasad Pandurangan,Typhaine Paysan-Lafosse,Sebastien Pesseat,Simon C. Potter,Matloob Qureshi,Neil D. Rawlings,Nicole Redaschi,Lorna Richardson,Catherine Rivoire,Gustavo A. Salazar,Amaia Sangrador-Vegas,Christian J. A. Sigrist,Ian Sillitoe,Granger G. Sutton,Narmada Thanki,Paul Thomas,Silvio C. E. Tosatto,Siew-Yit Yong,Robert D. Finn +42 more
TL;DR: Recent developments with InterPro (version 70.0) and its associated software are reported, including an 18% growth in the size of the database in terms on new InterPro entries, updates to content, the inclusion of an additional entry type, refined modelling of discontinuous domains, and the development of a new programmatic interface and website.
Journal ArticleDOI
The InterPro protein families and domains database: 20 years on.
Matthias Blum,Hsin-Yu Chang,Sara Chuguransky,Tiago Grego,Swaathi Kandasaamy,Alex L. Mitchell,Gift Nuka,Typhaine Paysan-Lafosse,Matloob Qureshi,Shriya Raj,Lorna Richardson,Gustavo A. Salazar,Lowri Williams,Peer Bork,Alan Bridge,Julian Gough,Daniel H. Haft,Ivica Letunic,Aron Marchler-Bauer,Huaiyu Mi,Darren A. Natale,Marco Necci,Christine A. Orengo,Arun Prasad Pandurangan,Catherine Rivoire,Christian J. A. Sigrist,Ian Sillitoe,Narmada Thanki,Paul Thomas,Silvio C. E. Tosatto,Cathy H. Wu,Alex Bateman,Robert D. Finn +32 more
TL;DR: The status of InterPro (version 81.0) in its 20th year of operation, and its associated software, is reported, including updates to database content, the release of a new website and REST API, and performance improvements in InterProScan.
Journal ArticleDOI
CATH: comprehensive structural and functional annotations for genome sequences
Ian Sillitoe,Tony E. Lewis,Alison L. Cuff,Sayoni Das,Paul Ashford,Natalie L. Dawson,Nicholas Furnham,Roman A. Laskowski,David A. Lee,Jonathan G. Lees,Sonja Lehtinen,Romain A. Studer,Janet M. Thornton,Christine A. Orengo +13 more
TL;DR: This article provides an update on the major developments in the 2 years since the last publication in this journal including: significant improvements to the predictive power of the authors' functional families (FunFams); the release of their ‘current’ putative domain assignments (CATH-B); a new, strictly non-redundant data set of CATH domains suitable for homology benchmarking experiments (Cath-40) and a number of improved to the web pages.