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Igor V. Grigoriev
Researcher at University of California, Berkeley
Publications - 443
Citations - 62388
Igor V. Grigoriev is an academic researcher from University of California, Berkeley. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 98, co-authored 373 publications receiving 53152 citations. Previous affiliations of Igor V. Grigoriev include University of California & Lawrence Berkeley National Laboratory.
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Journal ArticleDOI
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
Gerald A. Tuskan,Gerald A. Tuskan,Stephen P. DiFazio,Stephen P. DiFazio,Stefan Jansson,Joerg Bohlmann,Igor V. Grigoriev,Uffe Hellsten,Nicholas H. Putnam,Steven G. Ralph,Stephane Rombauts,Asaf Salamov,Jacquie Schein,Lieven Sterck,Andrea Aerts,Rishikeshi Bhalerao,Rishikesh P. Bhalerao,Damien Blaudez,Wout Boerjan,Annick Brun,Amy M. Brunner,Victor Busov,Malcolm M. Campbell,John E. Carlson,Michel Chalot,Jarrod Chapman,G.-L. Chen,Dawn Cooper,Pedro M. Coutinho,Jérémy Couturier,Sarah F. Covert,Quentin C. B. Cronk,R. Cunningham,John M. Davis,Sven Degroeve,Annabelle Déjardin,Claude W. dePamphilis,John C. Detter,Bill Dirks,Inna Dubchak,Inna Dubchak,Sébastien Duplessis,Jürgen Ehlting,Brian E. Ellis,Karla C Gendler,David Goodstein,Michael Gribskov,Jane Grimwood,Andrew Groover,Lee E. Gunter,Björn Hamberger,Berthold Heinze,Yrjö Helariutta,Yrjö Helariutta,Yrjö Helariutta,Bernard Henrissat,D. Holligan,Robert A. Holt,Wenyu Huang,N. Islam-Faridi,Steven J.M. Jones,M. Jones-Rhoades,Richard A. Jorgensen,Chandrashekhar P. Joshi,Jaakko Kangasjärvi,Jan Karlsson,Colin T. Kelleher,Robert Kirkpatrick,Matias Kirst,Annegret Kohler,Udaya C. Kalluri,Frank W. Larimer,Jim Leebens-Mack,Jean-Charles Leplé,Philip F. LoCascio,Y. Lou,Susan Lucas,Francis Martin,Barbara Montanini,Carolyn A. Napoli,David R. Nelson,C D Nelson,Kaisa Nieminen,Ove Nilsson,V. Pereda,Gary F. Peter,Ryan N. Philippe,Gilles Pilate,Alexander Poliakov,J. Razumovskaya,Paul G. Richardson,Cécile Rinaldi,Kermit Ritland,Pierre Rouzé,D. Ryaboy,Jeremy Schmutz,J. Schrader,Bo Segerman,H. Shin,Asim Siddiqui,Fredrik Sterky,Astrid Terry,Chung-Jui Tsai,Edward C. Uberbacher,Per Unneberg,Jorma Vahala,Kerr Wall,Susan R. Wessler,Guojun Yang,T. Yin,Carl J. Douglas,Marco A. Marra,Göran Sandberg,Y. Van de Peer,Daniel S. Rokhsar,Daniel S. Rokhsar +115 more
TL;DR: The draft genome of the black cottonwood tree, Populus trichocarpa, has been reported in this paper, with more than 45,000 putative protein-coding genes identified.
Journal ArticleDOI
The Sorghum bicolor genome and the diversification of grasses
Andrew H. Paterson,John E. Bowers,Rémy Bruggmann,Inna Dubchak,Jane Grimwood,Heidrun Gundlach,Georg Haberer,Uffe Hellsten,Therese Mitros,Alexander Poliakov,Jeremy Schmutz,Manuel Spannagl,Haibao Tang,Xiyin Wang,Xiyin Wang,Thomas Wicker,Arvind K. Bharti,Jarrod Chapman,F. Alex Feltus,F. Alex Feltus,Udo Gowik,Igor V. Grigoriev,Eric Lyons,Christopher G. Maher,Mihaela Martis,Apurva Narechania,Robert Otillar,Bryan W. Penning,Asaf Salamov,Yu Wang,Lifang Zhang,Nicholas C. Carpita,Michael Freeling,Alan R. Gingle,C. Thomas Hash,Beat Keller,Patricia E. Klein,Stephen Kresovich,Maureen C. McCann,Ray Ming,Daniel G. Peterson,Daniel G. Peterson,Mehboob-ur-Rahman,Mehboob-ur-Rahman,Doreen Ware,Doreen Ware,Peter Westhoff,Klaus F. X. Mayer,Joachim Messing,Daniel S. Rokhsar,Daniel S. Rokhsar +50 more
TL;DR: An initial analysis of the ∼730-megabase Sorghum bicolor (L.) Moench genome is presented, placing ∼98% of genes in their chromosomal context using whole-genome shotgun sequence validated by genetic, physical and syntenic information.
Journal ArticleDOI
The Chlamydomonas Genome Reveals the Evolution of Key Animal and Plant Functions
Sabeeha S. Merchant,Simon E. Prochnik,Olivier Vallon,Elizabeth H. Harris,Steven J. Karpowicz,George B. Witman,Astrid Terry,Asaf Salamov,Lillian K. Fritz-Laylin,Laurence Maréchal-Drouard,Wallace F. Marshall,Liang-Hu Qu,David R. Nelson,Anton A. Sanderfoot,Martin H. Spalding,Vladimir V. Kapitonov,Qinghu Ren,Patrick J. Ferris,Erika Lindquist,Harris Shapiro,Susan Lucas,Jane Grimwood,Jeremy Schmutz,Pierre Cardol,Pierre Cardol,Heriberto Cerutti,Guillaume Chanfreau,Chun-Long Chen,Valérie Cognat,Martin T. Croft,Rachel M. Dent,Susan K. Dutcher,Emilio Fernández,Hideya Fukuzawa,David González-Ballester,Diego González-Halphen,Armin Hallmann,Marc Hanikenne,Michael Hippler,William Inwood,Kamel Jabbari,Ming Kalanon,Richard Kuras,Paul A. Lefebvre,Stéphane D. Lemaire,Alexey V. Lobanov,Martin Lohr,Andrea L Manuell,Iris Meier,Laurens Mets,Maria Mittag,Telsa M. Mittelmeier,James V. Moroney,Jeffrey L. Moseley,Carolyn A. Napoli,Aurora M. Nedelcu,Krishna K. Niyogi,Sergey V. Novoselov,Ian T. Paulsen,Greg Pazour,Saul Purton,Jean-Philippe Ral,Diego Mauricio Riaño-Pachón,Wayne R. Riekhof,Linda A. Rymarquis,Michael Schroda,David B. Stern,James G. Umen,Robert D. Willows,Nedra F. Wilson,Sara L. Zimmer,Jens Allmer,Janneke Balk,Katerina Bisova,Chong-Jian Chen,Marek Eliáš,Karla C Gendler,Charles R. Hauser,Mary Rose Lamb,Heidi K. Ledford,Joanne C. Long,Jun Minagawa,M. Dudley Page,Junmin Pan,Wirulda Pootakham,Sanja Roje,Annkatrin Rose,Eric Stahlberg,Aimee M. Terauchi,Pinfen Yang,Steven G. Ball,Chris Bowler,Carol L. Dieckmann,Vadim N. Gladyshev,Pamela J. Green,Richard A. Jorgensen,Stephen P. Mayfield,Bernd Mueller-Roeber,Sathish Rajamani,Richard T. Sayre,Peter Brokstein,Inna Dubchak,David Goodstein,Leila Hornick,Y. Wayne Huang,Jinal Jhaveri,Yigong Luo,Diego Martinez,Wing Chi Abby Ngau,Bobby Otillar,Alexander Poliakov,Aaron Porter,Lukasz Szajkowski,Gregory Werner,Kemin Zhou,Igor V. Grigoriev,Daniel S. Rokhsar,Daniel S. Rokhsar,Arthur R. Grossman +118 more
TL;DR: Analyses of the Chlamydomonas genome advance the understanding of the ancestral eukaryotic cell, reveal previously unknown genes associated with photosynthetic and flagellar functions, and establish links between ciliopathy and the composition and function of flagella.
Journal ArticleDOI
The Physcomitrella Genome Reveals Evolutionary Insights into the Conquest of Land by Plants
Stefan A. Rensing,Daniel Lang,Andreas Zimmer,Astrid Terry,Asaf Salamov,Harris Shapiro,Tomoaki Nishiyama,Pierre-François Perroud,Erika Lindquist,Yasuko Kamisugi,Takako Tanahashi,Takako Tanahashi,Keiko Sakakibara,Tomomichi Fujita,Kazuko Oishi,Tadasu Shin-I,Yoko Kuroki,Atsushi Toyoda,Yutaka Suzuki,Shin-ichi Hashimoto,Kazuo Yamaguchi,Sumio Sugano,Yuji Kohara,Yuji Kohara,Asao Fujiyama,Asao Fujiyama,Aldwin M. Anterola,Setsuyuki Aoki,Neil W. Ashton,W. Brad Barbazuk,Elizabeth I. Barker,Jeffrey L. Bennetzen,Robert E. Blankenship,Sung Hyun Cho,Susan K. Dutcher,Mark Estelle,Jeffrey A. Fawcett,Heidrun Gundlach,Kousuke Hanada,Alexander Heyl,Karen A. Hicks,Karen A. Hicks,Jon Hughes,Martin Lohr,Klaus F. X. Mayer,Alexander N. Melkozernov,Takashi Murata,Takashi Murata,David R. Nelson,Birgit Pils,Michael J. Prigge,Bernd Reiss,Tanya Renner,Stephane Rombauts,Paul J. Rushton,Anton A. Sanderfoot,Gabriele Schween,Shin-Han Shiu,Kurt Stueber,Frederica L. Theodoulou,Hank Tu,Yves Van de Peer,P. J. Verrier,Elizabeth R. Waters,Andrew J. Wood,Lixing Yang,David J. Cove,David J. Cove,Andrew C. Cuming,Mitsuyasu Hasebe,Mitsuyasu Hasebe,Susan Lucas,Brent D. Mishler,Ralf Reski,Igor V. Grigoriev,Ralph S. Quatrano,Jeffrey L. Boore,Jeffrey L. Boore +77 more
TL;DR: This comparison reveals genomic changes concomitant with the evolutionary movement to land, including a general increase in gene family complexity; loss of genes associated with aquatic environments; acquisition of genes for tolerating terrestrial stresses; and the development of the auxin and abscisic acid signaling pathways for coordinating multicellular growth and dehydration response.
Journal ArticleDOI
The amphioxus genome and the evolution of the chordate karyotype
Nicholas H. Putnam,Thomas Butts,David E. K. Ferrier,Rebecca F. Furlong,Uffe Hellsten,Takeshi Kawashima,Takeshi Kawashima,Marc Robinson-Rechavi,Marc Robinson-Rechavi,Eiichi Shoguchi,Eiichi Shoguchi,Astrid Terry,Jr-Kai Yu,E grave,lia Benito-Gutiérrez,Inna Dubchak,Jordi Garcia-Fernàndez,Jeremy J. Gibson-Brown,Igor V. Grigoriev,Amy C. Horton,Pieter J. de Jong,Jerzy Jurka,Vladimir V. Kapitonov,Yuji Kohara,Yoko Kuroki,Erika Lindquist,Susan Lucas,Kazutoyo Osoegawa,Len A. Pennacchio,Asaf Salamov,Yutaka Satou,Tatjana Sauka-Spengler,Jeremy Schmutz,Tadasu Shin-I,Atsushi Toyoda,Marianne Bronner-Fraser,Asao Fujiyama,Linda Z. Holland,Peter W. H. Holland,Nori Satoh,Nori Satoh,Daniel S. Rokhsar,Daniel S. Rokhsar +42 more
TL;DR: Whole-genome comparisons illuminate the murky relationships among the three chordate groups (tunicates, lancelets and vertebrates), and allow not only reconstruction of the gene complement of the last common chordate ancestor but also partial reconstruction of its genomic organization.