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Ilka Diester
Researcher at University of Freiburg
Publications - 61
Citations - 5156
Ilka Diester is an academic researcher from University of Freiburg. The author has contributed to research in topics: Optogenetics & Computer science. The author has an hindex of 19, co-authored 52 publications receiving 4101 citations. Previous affiliations of Ilka Diester include University of Tübingen & University of Freiburg Faculty of Biology.
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Journal ArticleDOI
U-Net: deep learning for cell counting, detection, and morphometry
Thorsten Falk,Dominic Mai,Robert Bensch,Özgün Çiçek,Ahmed Abdulkadir,Ahmed Abdulkadir,Yassine Marrakchi,Anton Böhm,Jan Deubner,Zoe Jäckel,Katharina Seiwald,Alexander Dovzhenko,Olaf Tietz,Cristina Dal Bosco,Sean Walsh,Deniz Saltukoglu,Tuan Leng Tay,Marco Prinz,Klaus Palme,Matias Simons,Ilka Diester,Thomas Brox,Olaf Ronneberger +22 more
TL;DR: An ImageJ plugin is presented that enables non-machine-learning experts to analyze their data with U-Net on either a local computer or a remote server/cloud service.
Journal ArticleDOI
Molecular and Cellular Approaches for Diversifying and Extending Optogenetics
Viviana Gradinaru,Feng Zhang,Charu Ramakrishnan,Joanna Mattis,Rohit Prakash,Ilka Diester,Inbal Goshen,Kimberly R. Thompson,Karl Deisseroth,Karl Deisseroth +9 more
TL;DR: Subcellular and transcellular trafficking strategies now permit increased potency of optical inhibition without increased light power requirement, and generalizable strategies for targeting cells based not only on genetic identity, but also on morphology and tissue topology, to allow versatile targeting when promoters are not known or in genetically intractable organisms.
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Cholinergic Interneurons Control Local Circuit Activity and Cocaine Conditioning
Ilana B. Witten,Shih Chun Lin,Matthew Brodsky,Rohit Prakash,Ilka Diester,Polina Anikeeva,Viviana Gradinaru,Charu Ramakrishnan,Karl Deisseroth +8 more
TL;DR: These neurons could be activated by cocaine, and silencing this drug-induced activity during cocaine exposure (despite the fact that the manipulation of the cholinergic interneurons was not aversive by itself) blocked cocaine conditioning in freely moving mammals.
Journal ArticleDOI
An optogenetic toolbox designed for primates
Ilka Diester,Matthew T. Kaufman,Murtaza Mogri,Ramin Pashaie,Ramin Pashaie,Werapong Goo,Ofer Yizhar,Charu Ramakrishnan,Karl Deisseroth,Krishna V. Shenoy +9 more
TL;DR: A new device for measuring in vivo fluorescence over time, allowing minimally invasive assessment of construct expression in the intact brain and a set of optogenetic tools designed for optogenetics experiments in the non-human primate brain are presented.
Journal ArticleDOI
Targeting cells with single vectors using multiple-feature Boolean logic
Lief E. Fenno,Joanna Mattis,Charu Ramakrishnan,Minsuk Hyun,Soo Yeun Lee,Miao He,Jason Tucciarone,Aslihan Selimbeyoglu,Andre Berndt,Logan Grosenick,Kelly A. Zalocusky,Hannah L. Bernstein,Haley M. Swanson,C. Perry,Ilka Diester,Frederick M. Boyce,Caroline E. Bass,Rachael L. Neve,Z. J. Huang,Karl Deisseroth +19 more
TL;DR: A flexible and modular approach is used to target intersectionally specified populations of inhibitory interneurons in mammalian hippocampus and neurons of the ventral tegmental area defined by both genetic and wiring properties, which may expand the application of genetically encoded interventional and observational tools for intact-systems biology.