I
Ilpo Vattulainen
Researcher at University of Helsinki
Publications - 344
Citations - 19068
Ilpo Vattulainen is an academic researcher from University of Helsinki. The author has contributed to research in topics: Lipid bilayer & Membrane. The author has an hindex of 73, co-authored 325 publications receiving 16445 citations. Previous affiliations of Ilpo Vattulainen include Helsinki University of Technology & Tampere University of Technology.
Papers
More filters
Journal ArticleDOI
Molecular lipidomics of exosomes released by PC-3 prostate cancer cells.
Alicia Llorente,Tore Skotland,Tore Skotland,Tuulia Sylvänne,Dimple Kauhanen,Tomasz Róg,Adam Orłowski,Ilpo Vattulainen,Ilpo Vattulainen,Kim Ekroos,Kirsten Sandvig,Kirsten Sandvig +11 more
TL;DR: The detailed lipid composition provided in this study may be useful to understand the mechanism of exosome formation, release and function, and several of the lipids enriched in exosomes could potentially be used as cancer biomarkers.
Journal ArticleDOI
Ordering effects of cholesterol and its analogues
Tomasz Róg,Marta Pasenkiewicz-Gierula,Ilpo Vattulainen,Ilpo Vattulainen,Ilpo Vattulainen,Mikko Karttunen +5 more
TL;DR: The biophysical effects of cholesterol on the lipid bilayer are discussed, in particular the ordering and condensing effects, concentrating on the molecular level or inter-atomic interactions perspective, starting from two-component systems and proceeding to many-component ones e.g., modeling lipid rafts.
Journal ArticleDOI
Molecular Dynamics Simulations of Lipid Bilayers: Major Artifacts Due to Truncating Electrostatic Interactions
TL;DR: Pronounced maxima or minima in g(r) appear exactly at the cutoff distance indicating that the truncation gives rise to artificial ordering between the polar phosphatidyl and choline groups of the DPPC molecules, whereas in systems described using PME, such artificial ordering is not present.
Journal ArticleDOI
Martini 3 : A general purpose force field for coarse-grained molecular dynamics
Paulo C. T. Souza,Paulo C. T. Souza,Riccardo Alessandri,Jonathan Barnoud,Jonathan Barnoud,Sebastian Thallmair,Sebastian Thallmair,Ignacio Faustino,Fabian Grünewald,Ilias Patmanidis,Haleh Abdizadeh,Bart M H Bruininks,Tsjerk A. Wassenaar,Peter C. Kroon,Josef Melcr,Vincent Nieto,Valentina Corradi,Hanif M. Khan,Hanif M. Khan,Jan Domański,Jan Domański,Matti Javanainen,Hector Martinez-Seara,Nathalie Reuter,Robert B. Best,Ilpo Vattulainen,Luca Monticelli,Xavier Periole,D. Peter Tieleman,Alex H. de Vries,Siewert J. Marrink +30 more
TL;DR: The coarse-grained Martini force field is widely used in biomolecular simulations as discussed by the authors, which allows accurate predictions of molecular packing and interactions in general, exemplified with a vast and diverse set of applications, ranging from oil/water partitioning and miscibility data to complex molecular systems, involving protein-protein and protein-lipid interactions and material science applications as ionic liquids and aedamers.
Journal ArticleDOI
Under the Influence of Alcohol: The Effect of Ethanol and Methanol on Lipid Bilayers
Michael Patra,Emppu Salonen,Emma Terama,Ilpo Vattulainen,Roland Faller,Bryan W. Lee,Juha M. Holopainen,Mikko Karttunen +7 more
TL;DR: In this article, the effects of short-chain alcohols, methanol and ethanol, on two different fully hydrated lipid bilayer systems (POPC and DPPC) in the fluid phase at 323 K were investigated.