J
J. Chris Detter
Researcher at Los Alamos National Laboratory
Publications - 30
Citations - 6927
J. Chris Detter is an academic researcher from Los Alamos National Laboratory. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 23, co-authored 30 publications receiving 6340 citations. Previous affiliations of J. Chris Detter include Joint Genome Institute & United States Department of Energy.
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Journal ArticleDOI
The Genome of the Diatom Thalassiosira Pseudonana: Ecology, Evolution, and Metabolism
E. Virginia Armbrust,John A. Berges,Chris Bowler,Beverley R. Green,Diego Martinez,Nicholas H. Putnam,Shiguo Zhou,Andrew E. Allen,Andrew E. Allen,Kirk E. Apt,Michael Bechner,Mark A. Brzezinski,Balbir K. Chaal,Anthony Chiovitti,Aubrey K. Davis,Mark S. Demarest,J. Chris Detter,Tijana Glavina,David Goodstein,Masood Z. Hadi,Uffe Hellsten,Mark Hildebrand,Bethany D. Jenkins,Jerzy Jurka,Vladimir V. Kapitonov,Nils Kröger,Winnie W. Y. Lau,Todd W. Lane,Frank W. Larimer,J. Casey Lippmeier,J. Casey Lippmeier,Susan Lucas,Mónica Medina,Anton Montsant,Miroslav Oborník,Miroslav Oborník,Micaela S. Parker,Brian Palenik,Gregory J. Pazour,Paul G. Richardson,Tatiana A. Rynearson,Mak A. Saito,David C. Schwartz,Kimberlee Thamatrakoln,Klaus Valentin,Assaf Vardi,Frances P. Wilkerson,Daniel S. Rokhsar +47 more
TL;DR: The 34 million-base-pair draft nuclear genome of the marine diatom Thalassiosira pseudonana and its 129 thousand-base pair plastid and 44 thousand base-pair mitochondrial genomes were reported in this article.
Journal ArticleDOI
The Phaeodactylum genome reveals the evolutionary history of diatom genomes
Chris Bowler,Andrew E. Allen,Andrew E. Allen,Jonathan H. Badger,Jane Grimwood,Kamel Jabbari,Alan Kuo,Uma Maheswari,Cindy Martens,Florian Maumus,Robert Otillar,Edda Rayko,Asaf Salamov,Klaas Vandepoele,Bank Beszteri,Ansgar Gruber,Marc Heijde,Michael Katinka,Thomas Mock,Klaus Valentin,Frédéric Verret,John A. Berges,Colin Brownlee,Jean-Paul Cadoret,Anthony Chiovitti,Chang Jae Choi,Sacha Coesel,Alessandra De Martino,J. Chris Detter,Colleen A. Durkin,Angela Falciatore,Jérome Fournet,Miyoshi Haruta,Marie J. J. Huysman,Bethany D. Jenkins,Katerina Jiroutova,Richard E. Jorgensen,Yolaine Joubert,Aaron Kaplan,Nils Kröger,Peter G. Kroth,Erica Lindquist,Markus Lommer,Véronique Martin-Jézéquel,Pascal J. Lopez,Susan Lucas,Manuela Mangogna,Karen M. McGinnis,Linda K. Medlin,Anton Montsant,Anton Montsant,Marie-Pierre Oudot-Le Secq,Carolyn A. Napoli,Miroslav Oborník,Micaela S. Parker,Jean-Louis Petit,Betina M. Porcel,Nicole Poulsen,Matthew Robison,Leszek Rychlewski,Tatiana A. Rynearson,Jeremy Schmutz,Jeremy Schmutz,Harris Shapiro,Magali Siaut,Michele S. Stanley,Michael R. Sussman,Alison Taylor,Assaf Vardi,Peter von Dassow,Wim Vyverman,Anusuya Willis,Lucyan S. Wyrwicz,Daniel S. Rokhsar,Jean Weissenbach,E. Virginia Armbrust,Beverley R. Green,Yves Van de Peer,Igor V. Grigoriev +78 more
TL;DR: Analysis of molecular divergence compared with yeasts and metazoans reveals rapid rates of gene diversification in diatoms, and documents the presence of hundreds of genes from bacteria, likely to provide novel possibilities for metabolite management and for perception of environmental signals.
Journal ArticleDOI
Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78
Diego Martinez,Luis F. Larrondo,Nik Putnam,Nik Putnam,Maarten D. Sollewijn Gelpke,Katherine H. Huang,Jarrod Chapman,Jarrod Chapman,Kevin G. Helfenbein,Preethi Ramaiya,J. Chris Detter,Frank W. Larimer,Pedro M. Coutinho,Bernard Henrissat,Randy M. Berka,Dan Cullen,Daniel S. Rokhsar +16 more
TL;DR: The sequenced genome of Phanerochaete chrysosporium strain RP78 reveals an impressive array of genes encoding secreted oxidases, peroxidases and hydrolytic enzymes that cooperate in wood decay, and provides a framework for further development of bioprocesses for biomass utilization, organopollutant degradation and fiber bleaching.
Journal ArticleDOI
Three Genomes from the Phylum Acidobacteria Provide Insight into the Lifestyles of These Microorganisms in Soils
Naomi L. Ward,Jean F. Challacombe,Jean F. Challacombe,Peter H. Janssen,Peter H. Janssen,Bernard Henrissat,Pedro M. Coutinho,Martin Wu,Gary Xie,Gary Xie,Daniel H. Haft,Michelle Sait,Jonathan H. Badger,Ravi D. Barabote,Ravi D. Barabote,Brent Bradley,Thomas Brettin,Thomas Brettin,Lauren M. Brinkac,David Bruce,David Bruce,Todd Creasy,Sean C. Daugherty,Tanja M. Davidsen,Robert T. DeBoy,J. Chris Detter,J. Chris Detter,Robert J. Dodson,A. Scott Durkin,Anuradha Ganapathy,Michelle Gwinn-Giglio,Cliff Han,Cliff Han,Hoda Khouri,Hajnalka Kiss,Hajnalka Kiss,Sagar Kothari,Ramana Madupu,Karen E. Nelson,William C. Nelson,Ian T. Paulsen,Kevin Penn,Qinghu Ren,M. J. Rosovitz,Jeremy D. Selengut,Susmita Shrivastava,Steven A. Sullivan,Roxanne Tapia,Roxanne Tapia,L. Sue Thompson,L. Sue Thompson,Kisha Watkins,Qi Yang,Chunhui Yu,Nikhat Zafar,Liwei Zhou,Cheryl R. Kuske +56 more
TL;DR: Combining the genomic evidence with available culture traits, it is postulate that cells of these isolates are long-lived, divide slowly, exhibit slow metabolic rates under low-nutrient conditions, and are well equipped to tolerate fluctuations in soil hydration.
Journal ArticleDOI
Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae.
Jongsik Chun,Christopher J. Grim,Nur A. Hasan,Jehee Lee,Seon Young Choi,Bradd J. Haley,Elisa Taviani,Yoon-Seong Jeon,Dong Wook Kim,Jaehak Lee,Thomas Brettin,David Bruce,Jean F. Challacombe,J. Chris Detter,Cliff Han,A. Christine Munk,Olga Chertkov,Linda Meincke,Elizabeth Saunders,Ronald A. Walters,Anwar Huq,G. Balakrish Nair,Rita R. Colwell +22 more
TL;DR: Based on the comparative genomics, it is concluded that V. cholerae undergoes extensive genetic recombination via lateral gene transfer, and, therefore, genome assortment, not serogroup, should be used to define pathogenic V.cholerae clones.