Jack Dongarra

Bio: Jack Dongarra is an academic researcher from University of Tennessee. The author has contributed to research in topics: Linear algebra & ScaLAPACK. The author has an hindex of 113, co-authored 1315 publications receiving 65498 citations. Previous affiliations of Jack Dongarra include University of Illinois at Urbana–Champaign & Old Dominion University.

MPI: The Complete Reference

Abstract: From the Publisher: MPI, the Message Passing Interface, is a standard and portable library of communications subroutines for parallel programming designed to function on a wide variety of parallel computers. It is useful on both parallel computers, such as IBM's SP2, the Cray ResearchT3D, and the Connection Machine, as well as networks of workstations. Written by five of the principal creators of the latest MPI standard MPI: The Complete Reference is an annotated manual for the latest 1.1 version of the standard that illuminates the more advanced and subtle features of MPI. It can be read in conjunction with the companion tutorial volume, Using MPI: Portable Parallel Programming with the Message-Passing Interface, by William Gropp, Ewing Lusk, and Anthony Skjellum. MPI: The Complete Reference is the only source that covers such advanced issues in parallel computing and programming as true portability, deadlock, high-performance message passing, and libraries for distributed and parallel computing. The annotations provide numerous illustrative programming examples and delve into even the most esoteric features or consequences of the standard. They explain why certain design choices were made, how users should use the interface, and how implementors should construct their own version of MPI. Scientific and Engineering Computation series

PVM: Parallel virtual machine: a users' guide and tutorial for networked parallel computing

Abstract: Part 1 Introduction: heterogeneous network computing trends in distributed computing PVM overview other packages. Part 2 The PVM system. Part 3 Using PVM: how to obtain the PVM software setup to use PVM setup summary starting PVM common startup problems running PVM programs PVM console details host file options. Part 4 Basic programming techniques: common parallel programming paradigms workload allocation porting existing applications to PVM. Part 5 PVM user interface: process control information dynamic configuration signalling setting and getting options message passing dynamic process groups. Part 6 Program examples: fork-join dot product failure matrix multiply one-dimensional heat equation. Part 7 How PVM works: components messages PVM daemon libpvm library protocols message routing task environment console program resource limitations multiprocessor systems. Part 8 Advanced topics: XPVM porting PVM to new architectures. Part 9 Troubleshooting: geting PVM installed getting PVM running compiling applications running applications debugging and tracing debugging the system. Appendices: history of PVM versions PVM 3 routines.

A set of level 3 basic linear algebra subprograms

Abstract: This paper describes an extension to the set of Basic Linear Algebra Subprograms. The extensions are targeted at matrix-vector operations that should provide for efficient and portable implementations of algorithms for high-performance computers

Open MPI: Goals, Concept, and Design of a Next Generation MPI Implementation

Abstract: A large number of MPI implementations are currently available, each of which emphasize different aspects of high-performance computing or are intended to solve a specific research problem. The result is a myriad of incompatible MPI implementations, all of which require separate installation, and the combination of which present significant logistical challenges for end users. Building upon prior research, and influenced by experience gained from the code bases of the LAM/MPI, LA-MPI, and FT-MPI projects, Open MPI is an all-new, production-quality MPI-2 implementation that is fundamentally centered around component concepts. Open MPI provides a unique combination of novel features previously unavailable in an open-source, production-quality implementation of MPI. Its component architecture provides both a stable platform for third-party research as well as enabling the run-time composition of independent software add-ons. This paper presents a high-level overview the goals, design, and implementation of Open MPI.

Templates for the Solution of Algebraic Eigenvalue Problems: A Practical Guide

Abstract: List of symbols and acronyms List of iterative algorithm templates List of direct algorithms List of figures List of tables 1: Introduction 2: A brief tour of Eigenproblems 3: An introduction to iterative projection methods 4: Hermitian Eigenvalue problems 5: Generalized Hermitian Eigenvalue problems 6: Singular Value Decomposition 7: Non-Hermitian Eigenvalue problems 8: Generalized Non-Hermitian Eigenvalue problems 9: Nonlinear Eigenvalue problems 10: Common issues 11: Preconditioning techniques Appendix: of things not treated Bibliography Index .

Going deeper with convolutions

Abstract: We propose a deep convolutional neural network architecture codenamed Inception that achieves the new state of the art for classification and detection in the ImageNet Large-Scale Visual Recognition Challenge 2014 (ILSVRC14). The main hallmark of this architecture is the improved utilization of the computing resources inside the network. By a carefully crafted design, we increased the depth and width of the network while keeping the computational budget constant. To optimize quality, the architectural decisions were based on the Hebbian principle and the intuition of multi-scale processing. One particular incarnation used in our submission for ILSVRC14 is called GoogLeNet, a 22 layers deep network, the quality of which is assessed in the context of classification and detection.

I and i

Abstract: There is, I think, something ethereal about i —the square root of minus one. I remember first hearing about it at school. It seemed an odd beast at that time—an intruder hovering on the edge of reality. Usually familiarity dulls this sense of the bizarre, but in the case of i it was the reverse: over the years the sense of its surreal nature intensified. It seemed that it was impossible to write mathematics that described the real world in …

QUANTUM ESPRESSO: a modular and open-source software project for quantum simulations of materials

Abstract: QUANTUM ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling, based on density-functional theory, plane waves, and pseudopotentials (norm-conserving, ultrasoft, and projector-augmented wave). The acronym ESPRESSO stands for opEn Source Package for Research in Electronic Structure, Simulation, and Optimization. It is freely available to researchers around the world under the terms of the GNU General Public License. QUANTUM ESPRESSO builds upon newly-restructured electronic-structure codes that have been developed and tested by some of the original authors of novel electronic-structure algorithms and applied in the last twenty years by some of the leading materials modeling groups worldwide. Innovation and efficiency are still its main focus, with special attention paid to massively parallel architectures, and a great effort being devoted to user friendliness. QUANTUM ESPRESSO is evolving towards a distribution of independent and interoperable codes in the spirit of an open-source project, where researchers active in the field of electronic-structure calculations are encouraged to participate in the project by contributing their own codes or by implementing their own ideas into existing codes.

Distributed Optimization and Statistical Learning Via the Alternating Direction Method of Multipliers

Abstract: Many problems of recent interest in statistics and machine learning can be posed in the framework of convex optimization. Due to the explosion in size and complexity of modern datasets, it is increasingly important to be able to solve problems with a very large number of features or training examples. As a result, both the decentralized collection or storage of these datasets as well as accompanying distributed solution methods are either necessary or at least highly desirable. In this review, we argue that the alternating direction method of multipliers is well suited to distributed convex optimization, and in particular to large-scale problems arising in statistics, machine learning, and related areas. The method was developed in the 1970s, with roots in the 1950s, and is equivalent or closely related to many other algorithms, such as dual decomposition, the method of multipliers, Douglas–Rachford splitting, Spingarn's method of partial inverses, Dykstra's alternating projections, Bregman iterative algorithms for l1 problems, proximal methods, and others. After briefly surveying the theory and history of the algorithm, we discuss applications to a wide variety of statistical and machine learning problems of recent interest, including the lasso, sparse logistic regression, basis pursuit, covariance selection, support vector machines, and many others. We also discuss general distributed optimization, extensions to the nonconvex setting, and efficient implementation, including some details on distributed MPI and Hadoop MapReduce implementations.