J
James Done
Researcher at California Institute of Technology
Publications - 10
Citations - 3263
James Done is an academic researcher from California Institute of Technology. The author has contributed to research in topics: WormBase & Ontology (information science). The author has an hindex of 9, co-authored 10 publications receiving 2800 citations. Previous affiliations of James Done include Children's Hospital Los Angeles & Texas A&M University.
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Journal ArticleDOI
Gene Ontology Consortium: going forward
Judith A. Blake,Juancarlos Chan,Ranjana Kishore,Paul W. Sternberg,K. Van Auken,Hans-Michael Müller,James Done,Yanpeng Li +7 more
TL;DR: Improvements and expansions to several branches of the Gene Ontology, as well as updates that have allowed us to more efficiently disseminate the GO and capture feedback from the research community are described.
Journal ArticleDOI
WormBase 2016: expanding to enable helminth genomic research
Kevin L. Howe,Bruce J. Bolt,Scott Cain,Juancarlos Chan,Wen J. Chen,Paul Davis,James Done,Thomas A. Down,Sibyl Gao,Christian A. Grove,Todd W. Harris,Ranjana Kishore,Raymond Lee,Jane Lomax,Yuling Li,Hans-Michael Müller,Cecilia Nakamura,Paulo A. S. Nuin,Michael Paulini,Daniela Raciti,Gary Schindelman,Eleanor J Stanley,Mary Ann Tuli,Kimberly Van Auken,Daniel Wang,Xiaodong Wang,Gary Williams,Adam Wright,Karen Yook,Matthew Berriman,Paul J. Kersey,Tim Schedl,Lincoln Stein,Paul W. Sternberg +33 more
TL;DR: WormBase (www.wormbase.org) is a central repository for research data on the biology, genetics and genomics of Caenorhabditis elegans and other nematodes, and has made a number of improvements to its main website, including new tools for browsing genomic features and ontology annotations.
Journal ArticleDOI
WormBase 2014: new views of curated biology
Todd W. Harris,Joachim Baran,Tamberlyn Bieri,Abigail Cabunoc,Juancarlos Chan,Wen J. Chen,Paul H. Davis,James Done,Christian A. Grove,Kevin L. Howe,Ranjana Kishore,Raymond Lee,Yuling Li,Hans-Michael Müller,Cecilia Nakamura,Philip Ozersky,Michael Paulini,Daniela Raciti,Gary Schindelman,Mary Ann Tuli,Kimberly Van Auken,Daniel Wang,Xiaodong Wang,Gary Williams,J. D. Wong,Karen Yook,Tim Schedl,Jonathan Hodgkin,Matthew Berriman,Paul J. Kersey,John Spieth,Lincoln Stein,Paul W. Sternberg +32 more
TL;DR: Efforts to organize the original atomized and highly contextualized curated data into integrated syntheses of discrete biological topics are described.
Posted Content
Report of the SUGRA Working Group for run II of the Tevatron
V. Barger,Tao Han,M. Gold,G.C. Cho,Y. Wang,Greg W. Anderson,J. T. White,Pran Nath,Aurore Savoy-Navarro,D. Chang,E. Accomando,S. Blessing,J. Lykken,S. Mani,M. Brhlik,W. Bokhari,Chunhui Chen,Wai-Yee Keung,R. Oishi,N. Polonksy,R. Demina,M. B. Magro,Kaoru Hagiwara,Maria Spiropulu,K. Hikasa,James Done,K. Ono,Y. Kato,B. W. Harris,Patrizia Azzi,E. Flattum,P. Quintana,J. Feng,David Saltzberg,C. Holck,H.C. Cheng,Stephen Mrenna,Michael Klasen,C. Kao,Gerardo Ganis,S. Abel,Tim M. P. Tait,M. Worcester,Eduardo De Moraes Gregores,Damien M. Pierce,R. Arnowitt,Piotr H. Chankowski,A. Pompos,M. Roco,Marcela Carena,Caleb Smith,Stephen J. Parke,Apostolos Pilaftsis,M. Paterno,T. Blazek,Sarah Catherine Eno,Teruki Kamon,Michelangelo L. Mangano,Pedro G Mercadante,Wim Beenakker,R. Szalapski,D. Norman,Micheal S. Berger,Konstantin Matchev,Jonathan Bagger,Howard Baer,Jane Nachtman,B. Tannenbaum,Frank Paige,Edmond L. Berger,Andrei Nomerotski,Michael Kramer,Stephan Lammel,Laurent Duflot,R.J. Zhang,Tilman Plehn,Y. Seiya,Michael Spira,Stefan Pokorski,Zack Sullivan,H.H. Williams,N. Bruner,S. D. Worm,M. Zielinski,T.J. Li,D. Chakraborty,Bhaskar Dutta,Alexander Belyaev,Ojp Eboli,Toby Falk,Doreen Wackeroth,Maxwell Chertok,D. R. Claes,Mihoko M. Nojiri +93 more
TL;DR: Barger et al. as mentioned in this paper presented an analysis of the discovery reach for supersymmetric particles at the upgraded Tevatron collider, assuming that SUSY breaking results in universal soft breaking parameters at the grand unification scale.
Journal ArticleDOI
OncoKids: A Comprehensive Next-Generation Sequencing Panel for Pediatric Malignancies
Matthew C. Hiemenz,Matthew C. Hiemenz,Dejerianne Ostrow,Tracy M. Busse,Jonathan D. Buckley,Jonathan D. Buckley,Dennis T. Maglinte,Moiz Bootwalla,James Done,Jianling Ji,Jianling Ji,Gordana Raca,Gordana Raca,Alex Ryutov,Xinjie Xu,Xinjie Xu,Chao Jie Zhen,Jeffrey M. Conroy,Florette K. Hazard,Joshua L. Deignan,Beverly Barton Rogers,Amanda L. Treece,David M. Parham,David M. Parham,Xiaowu Gai,Xiaowu Gai,Alexander R. Judkins,Alexander R. Judkins,Timothy J. Triche,Timothy J. Triche,Jaclyn A. Biegel,Jaclyn A. Biegel +31 more
TL;DR: The results from this study support the use of OncoKids for routine clinical testing of a wide variety of pediatric malignancies and describe the validation of this panel by using a large cohort of 192 unique clinical samples that included a wide range of tumor types and alterations.