J
James J. Collins
Researcher at Massachusetts Institute of Technology
Publications - 700
Citations - 105255
James J. Collins is an academic researcher from Massachusetts Institute of Technology. The author has contributed to research in topics: Synthetic biology & Population. The author has an hindex of 151, co-authored 669 publications receiving 89476 citations. Previous affiliations of James J. Collins include Baylor College of Medicine & University at Albany, SUNY.
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Journal ArticleDOI
Multiple mechanisms disrupt the let-7 microRNA family in neuroblastoma
John T. Powers,Kaloyan M. Tsanov,Daniel S. Pearson,Frederik Roels,Catherine S. Spina,Richard Y. Ebright,Marc T. Seligson,Yvanka de Soysa,Patrick Cahan,Jessica Theißen,Ho-Chou Tu,Areum Han,Kyle C. Kurek,Grace S. LaPier,Jihan K. Osborne,Samantha J. Ross,Marcella Cesana,James J. Collins,James J. Collins,Frank Berthold,George Q. Daley +20 more
TL;DR: This paper found that genetic loss of let-7 is common in neuroblastoma, inversely associated with myCN amplification, and independently associated with poor outcomes, providing a rationale for chromosomal loss patterns in NC.
Journal ArticleDOI
Systematic identification of factors for provirus silencing in embryonic stem cells.
Bin Xia Yang,Chadi A. El Farran,Chadi A. El Farran,Hongchao Guo,Tao Yu,Tao Yu,Hai Tong Fang,Hao Fei Wang,Hao Fei Wang,Sharon Schlesinger,Yu Fen Samantha Seah,Germaine Yen Lin Goh,Suat Peng Neo,Yat Li,Matthew C. Lorincz,Vinay Tergaonkar,Vinay Tergaonkar,Tit Meng Lim,Lingyi Chen,Jayantha Gunaratne,Jayantha Gunaratne,James J. Collins,Stephen P. Goff,Stephen P. Goff,George Q. Daley,Hu Li,Frederic Bard,Frederic Bard,Yuin-Han Loh,Yuin-Han Loh +29 more
TL;DR: In this article, the authors systematically dissected the cellular factors involved in provirus repression in embryonic carcinomas (ECs) and ESCs by a genome-wide siRNA screen, and reported a genomewide atlas of functional nodes that mediate proviral silencing in ESCs and illuminates the comprehensive, interconnected, and multi-layered genetic and epigenetic mechanisms by which ESCs repress retroviruses within the genome.
Journal ArticleDOI
Upright, correlated random walks: A statistical‐biomechanics approach to the human postural control system
James J. Collins,C. J. De Luca +1 more
TL;DR: This study analyzes COP trajectories as one-dimensional and two-dimensional random walks to reveal that over short-term intervals of time during undisturbed stance the COP behaves as a positively correlated random walk, whereas over long-term interval of time it resembles a negatively correlated randomWalk.
Intrathymic programming of effector fates in three molecularly distinct γδ T cell subtypes
Kavitha Narayan,Katelyn E Sylvia,Nidhi Malhotra,Catherine C. Yin,Gregory W. Martens,Therese Vallerskog,Hardy Kornfeld,Na Xiong,Nadia R Cohen,Michael B. Brenner,Leslie J. Berg,Joonsoo Kang,Yan Zhou,Susan A. Shinton,Richard R. Hardy,Natalie A. Bezman,Joseph C. Sun,Charles C. Kim,Lewis L. Lanier,Jennifer Miller,Brian D. Brown,Miriam Merad,Anne L. Fletcher,Kutlu G. Elpek,Angelique Bellemare-Pelletier,Deepali Malhotra,Shannon J. Turley,Katelyn Sylvia,Roi Gazit,Brian S. Garrison,Derrick J. Rossi,Vladimir Jojic,Daphne Koller,Radu Jianu,David H. Laidlaw,James C. Costello,James J. Collins,Nadia Cohen,Patrick J. Brennan,Michael Brenner,Tal Shay,Aviv Regev,Francis Kim,Tata Nageswara Rao,Amy J. Wagers,Emmanuel L. Gautier,Claudia Jakubzick,Gwendalyn J. Randolph,Paul A. Monach,Adam J Best,Jamie Knell,Ananda W. Goldrath,Tracy Heng,Taras Kreslavsky,Michio W. Painter,Diane Mathis,Christophe Benoist +56 more
Journal ArticleDOI
Salmonella typhimurium intercepts Escherichia coli signaling to enhance antibiotic tolerance
Nicole M. Vega,Kyle R. Allison,Kyle R. Allison,Amanda N. Samuels,Amanda N. Samuels,Mark S. Klempner,James J. Collins +6 more
TL;DR: The results suggest that the intestinal pathogen S. typhimurium can intercept indole signaling from the commensal bacterium E. coli to enhance its antibiotic tolerance in the host intestine.