J
James Sun
Researcher at Foundation Medicine
Publications - 94
Citations - 12014
James Sun is an academic researcher from Foundation Medicine. The author has contributed to research in topics: Cancer & Rucaparib. The author has an hindex of 30, co-authored 84 publications receiving 8541 citations. Previous affiliations of James Sun include Massachusetts Institute of Technology & Broad Institute.
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Journal ArticleDOI
Analysis of 100,000 human cancer genomes reveals the landscape of tumor mutational burden
Zachary R. Chalmers,Caitlin F. Connelly,David Fabrizio,Siraj M. Ali,Riley Ennis,Alexa B. Schrock,Brittany Campbell,Adam Shlien,Juliann Chmielecki,Franklin W. Huang,Yuting He,James Sun,Uri Tabori,Mark Kennedy,Daniel S. Lieber,Steven Roels,Jared White,G. Otto,Jeffrey S. Ross,Levi A. Garraway,Levi A. Garraway,Vincent A. Miller,Phillip J. Stephens,Garrett M. Frampton +23 more
TL;DR: Measurements of TMB from comprehensive genomic profiling are strongly reflective of measurements from whole exome sequencing and model that below 0.5 Mb the variance in measurement increases significantly, demonstrating that many disease types have a substantial portion of patients with high TMB who might benefit from immunotherapy.
Journal ArticleDOI
Development and validation of a clinical cancer genomic profiling test based on massively parallel DNA sequencing
Garrett M. Frampton,Alex Fichtenholtz,Geoff Otto,Kai Wang,Sean R. Downing,Jie He,Michael Schnall-Levin,Jared White,Eric M. Sanford,Peter An,James Sun,Frank Juhn,Kristina W. Brennan,Kiel Iwanik,Ashley Maillet,Jamie Buell,Emily White,Mandy Zhao,Sohail Balasubramanian,Selmira Terzic,Tina Richards,Vera Banning,Lazaro Garcia,Kristen Mahoney,Zac Zwirko,Amy Donahue,Himisha Beltran,Himisha Beltran,Juan Miguel Mosquera,Juan Miguel Mosquera,Mark A. Rubin,Mark A. Rubin,Snjezana Dogan,Cyrus V. Hedvat,Michael F. Berger,Lajos Pusztai,Matthias Lechner,Chris Boshoff,Mirna Jarosz,Christine Vietz,Alexander N. Parker,Vincent A. Miller,Jeffrey S. Ross,Jeffrey S. Ross,John Curran,Maureen T. Cronin,Philip J. Stephens,Doron Lipson,Roman Yelensky +48 more
TL;DR: A test based on massively parallel DNA sequencing to characterize base substitutions, short insertions and deletions (indels), copy number alterations and selected fusions across 287 cancer-related genes from routine formalin-fixed and paraffin-embedded (FFPE) clinical specimens is described.
Journal ArticleDOI
Rucaparib maintenance treatment for recurrent ovarian carcinoma after response to platinum therapy (ARIEL3): a randomised, double-blind, placebo-controlled, phase 3 trial
Robert L. Coleman,Amit M. Oza,Domenica Lorusso,Carol Aghajanian,Ana Oaknin,Andrew Dean,Nicoletta Colombo,Johanne I Weberpals,Andrew R Clamp,Giovanni Scambia,Alexandra Leary,Robert W Holloway,Margarita Amenedo Gancedo,Peter C.C. Fong,Jeffrey C. Goh,David M. O'Malley,Deborah K. Armstrong,Jesus Garcia-Donas,Elizabeth M. Swisher,Anne Floquet,Gottfried E. Konecny,Iain A. McNeish,Clare L. Scott,Terri Cameron,Lara Maloney,Jeff Isaacson,Sandra Goble,Caroline Grace,Thomas Harding,Mitch Raponi,James Sun,Kevin K. Lin,Heidi Giordano,Jonathan A. Ledermann,Martin Buck,A Dean,Michael Friedlander,J C Goh,Paul R. Harnett,G Kichenadasse,C L Scott,H Denys,Luc Dirix,Ignace Vergote,Laurie Elit,Prafull Ghatage,Amit M. Oza,Marie Plante,Diane Provencher,J I Weberpals,Stephen Welch,A Floquet,Laurence Gladieff,Florence Joly,A Leary,Alain Lortholary,Jean-Pierre Lotz,J. Medioni,Olivier Tredan,Benoit You,A El-Balat,C Hänle,P Krabisch,T Neunhöffer,M Pölcher,Pauline Wimberger,Amnon Amit,S Kovel,M Leviov,Tamar Safra,Ronnie Shapira-Frommer,Salomon M. Stemmer,Alessandra Bologna,N Colombo,Domenica Lorusso,Sandro Pignata,Roberto Sabbatini,G Scambia,Stefano Tamberi,Claudio Zamagni,P C Fong,A O'Donnell,M Amenedo Gancedo,A Casado Herraez,J Garcia-Donas,E M Guerra,A Oaknin,I Palacio,Iris L. Romero,A Sanchez,Susana Banerjee,A Clamp,Y Drew,Hani Gabra,D Jackson,Jonathan A. Ledermann,I A McNeish,Christine Parkinson,Melanie E Powell,C Aghajanian,D K Armstrong,Michael J. Birrer,Mary K. Buss,Setsuko K. Chambers,L-m Chen,Robert L. Coleman,R W Holloway,G E Konecny,L Ma,Mark A. Morgan,R T Morris,David G. Mutch,D M O'Malley,B M Slomovitz,E M Swisher,T Vanderkwaak,M Vulfovich +116 more
TL;DR: This trial assessed rucaparib versus placebo after response to second-line or later platinum-based chemotherapy in patients with high-grade, recurrent, platinum-sensitive ovarian carcinoma harbouring a BRCA mutation or high percentage of genome-wide loss of heterozygosity.
Journal ArticleDOI
Neurological and neuropsychiatric complications of COVID-19 in 153 patients: a UK-wide surveillance study.
Aravinthan Varatharaj,Aravinthan Varatharaj,Naomi Thomas,Mark Ellul,Mark Ellul,Mark Ellul,Nicholas W. S. Davies,Thomas A Pollak,Elizabeth L Tenorio,Mustafa Sultan,Ava Easton,Gerome Breen,Michael S. Zandi,Jonathan P. Coles,Hadi Manji,Rustam Al-Shahi Salman,David K. Menon,Timothy R Nicholson,Laura A Benjamin,Laura A Benjamin,Alan Carson,Craig J. Smith,Martin R Turner,Tom Solomon,Tom Solomon,Tom Solomon,Rachel Kneen,Rachel Kneen,Sarah Pett,Ian Galea,Ian Galea,Rhys H. Thomas,Rhys H. Thomas,Benedict D Michael,Benedict D Michael,Benedict D Michael,Claire Allen,Neil Archibald,James Arkell,Peter Arthur-Farraj,Mark R. Baker,Harriet A. Ball,Verity Bradley-Barker,Zoe Brown,Stefania Bruno,Lois Carey,Christopher Carswell,Annie Chakrabarti,James Choulerton,Mazen Daher,Ruth Davies,Rafael Di Marco Barros,Sofia Dima,Rachel Dunley,Dipankar Dutta,Richard James Booth Ellis,Alex Everitt,Joseph Fady,Patricia Fearon,Leonora Fisniku,Ivie Gbinigie,Alan Gemski,Emma Gillies,Effrossyni Gkrania-Klotsas,Julie Grigg,Hisham Hamdalla,Jack Hubbett,Neil Hunter,Anne-Catherine Huys,Ihmoda Ihmoda,Sissi Ispoglou,Ashwani Jha,Ramzi Joussi,Dheeraj Kalladka,Hind Khalifeh,Sander Kooij,Guru Kumar,Sandar Kyaw,Lucia Li,Edward Littleton,Malcolm R. Macleod,Mary Joan MacLeod,Barbara Madigan,Vikram Mahadasa,Manonmani Manoharan,Richard Marigold,Isaac Marks,Paul M. Matthews,Michael Mccormick,Caroline Mcinnes,Antonio Metastasio,Philip Milburn-McNulty,Clinton Mitchell,Duncan Mitchell,Clare Morgans,Huw R. Morris,Jasper M. Morrow,Ahmed Mubarak Mohamed,Paula Mulvenna,Louis Murphy,Robert Namushi,Edward J Newman,Wendy Phillips,Ashwin Pinto,David A Price,Harald Proschel,Terry Quinn,Deborah Ramsey,Christine Roffe,Amy L Ross Russell,Neshika Samarasekera,Stephen Sawcer,Walee Sayed,Lakshmanan Sekaran,Jordi Serra-Mestres,Victoria K. Snowdon,Gayle Strike,James Sun,Christina Tang,Mark Vrana,Ryckie G. Wade,Chris Wharton,Lou Wiblin,Iryna Boubriak,Katie Herman,Gordon T. Plant +125 more
TL;DR: This is the first nationwide, cross-specialty surveillance study of acute neurological and psychiatric complications of COVID-19 and provides valuable and timely data that are urgently needed by clinicians, researchers, and funders.
Journal ArticleDOI
Rucaparib in relapsed, platinum-sensitive high-grade ovarian carcinoma (ARIEL2 Part 1): an international, multicentre, open-label, phase 2 trial
Elizabeth M. Swisher,Kevin K. Lin,Amit M. Oza,Clare L. Scott,Heidi Giordano,James Sun,Gottfried E. Konecny,Robert L. Coleman,Anna V. Tinker,David M. O'Malley,Rebecca Kristeleit,Ling Ma,Katherine M. Bell-McGuinn,James D. Brenton,Janiel M. Cragun,Ana Oaknin,Isabelle Ray-Coquard,Maria I. Harrell,Elaina Mann,Scott H. Kaufmann,Anne Floquet,Alexandra Leary,Thomas Harding,Sandra Goble,Lara Maloney,Jeff Isaacson,Andrew R. Allen,Lindsey Rolfe,Roman Yelensky,Mitch Raponi,Iain A. McNeish +30 more
TL;DR: The ability of tumour genomic LOH, quantified with a next-generation sequencing assay, to predict response to rucaparib, an oral PARP inhibitor, was assessed in ARIEL2, an international, multicentre, two-part, phase 2, open-label study.