Janice M. Straley

Bio: Janice M. Straley is an academic researcher from University of Alaska Southeast. The author has contributed to research in topics: Humpback whale & Whale. The author has an hindex of 31, co-authored 77 publications receiving 2761 citations. Previous affiliations of Janice M. Straley include University of Alaska Fairbanks.

Movements and Population Structure of Humpback Whales in the North Pacific

Abstract: Despite the extensive use of photographic identification methods to investigate humpback whales in the North Pacific, few quantitative analyses have been conducted. We report on a comprehensive analysis of interchange in the North Pacific among three wintering regions (Mexico, Hawaii, and Japan) each with two to three subareas, and feeding areas that extended from southern California to the Aleutian Islands. Of the 6,413 identification photographs of humpback whales obtained by 16 independent research groups between 1990 and 1993 and examined for this study, 3,650 photographs were determined to be of suitable quality. A total of 1,241 matches was found by two independent matching teams, identifying 2,712 unique whales in the sample (seen one to five times). Site fidelity was greatest at feeding areas where there was a high rate of resightings in the same area in different years and a low rate of interchange among different areas. Migrations between winter regions and feeding areas did not follow a simple pattern, although highest match rates were found for whales that moved between Hawaii and southeastern Alaska, and between mainland and Baja Mexico and California. Interchange among subareas of the three primary wintering regions was extensive for Hawaii, variable (depending on subareas) for Mexico, and low for Japan and reflected the relative distances among subareas. Interchange among these primary wintering regions was rare. This study provides the first quantitative assessment of the migratory structure of humpback whales in the entire North Pacific basin.

Migratory movement and population structure of humpback whales (Megaptera novaeanglieae) in the central and eastern North Pacific

Abstract: Photographs of individually identified humpback whales Megaptera novaeangliae were collected in regions throughout the central and eastern North Pacific during the years 1977 to 1983. A comparison of these photographs revealed extensive movement between seasonal habitats. Whales found wintering near Hawaii traveled to summer feeding regions throughout the coastal waters of Alaska. Whales wintering near Mexico were found in Alaskan feeding regions and near the Farallon Islands off central California. I-lttle exchange was found between the 2 wintering grounds or among the 5 summering grounds studied. Fidelity to a given feeding region was demonstrated by a high proportion of migratory return. Evidence of fidelity to a given wintering ground was less conclusive. The coloration of humpback whale flukes showed a longitudinal cline across the 5 feeding regions. Flukes of whales from the easternmost feeding regions were, on average, darker than those from the westernmost feeding regions. Whales in Hawaii and Mexico were similar in fluke coloration and the average coloration on both wintering grounds was intermediate between the extremes of the feeding regions. We propose that humpback whales in the eastern and central North Pacific form a single 'structured stock' consisting of several geographically-isolated 'feeding herds' which intermingle on 1 or more wintering grounds. Mark-recapture analyses of resightlng data indicate that the Hawaiian wintering congregation is 4 to 6 times larger than the southeastern Alaska feeding herd. Within a structured stock, sets of whales interact with different probabilities in each seasonal habitat. This, in turn, has important implications for the social organization and management of these whales.

Population structure of nuclear and mitochondrial DNA variation among humpback whales in the North Pacific

Abstract: The population structure of variation in a nuclear actin intron and the control region of mitochondrial DNA is described for humpback whales from eight regions in the North Pacific Ocean: central California, Baja Peninsula, nearshore Mexico (Bahia Banderas), offshore Mexico (Socorro Island), southeastern Alaska, central Alaska (Prince Williams Sound), Hawaii and Japan (Ogasawara Islands). Primary mtDNA haplotypes and intron alleles were identified using selected restriction fragment length polymorphisms of target sequences amplified by the polymerase chain reaction (PCR-RFLP). There was little evidence of heterogeneity in the frequencies of mtDNA haplotypes or actin intron alleles due to the year or sex composition of the sample. However, frequencies of four mtDNA haplotypes showed marked regional differences in their distributions (phi ST = 0.277; P < 0.001; n = 205 individuals) while the two alleles showed significant, but less marked, regional differences (phi ST = 0.033; P < 0.013; n = 400 chromosomes). An hierarchical analysis of variance in frequencies of haplotypes and alleles supported the grouping of six regions into a central and eastern stock with further partitioning of variance among regions within stocks for haplotypes but not for alleles. Based on available genetic and demographic evidence, the southeastern Alaska and central California feeding grounds were selected for additional analyses of nuclear differentiation using allelic variation at four microsatellite loci. All four loci showed significant differences in allele frequencies (overall FST = 0.043; P < 0.001; average n = 139 chromosomes per locus), indicating at least partial reproductive isolation between the two regions as well as the segregation of mtDNA lineages. Although the two feeding grounds were not panmictic for nuclear or mitochondrial loci, estimates of long-term migration rates suggested that male-mediated gene flow was several-fold greater than female gene flow. These results include and extend the range and sample size of previously published work, providing additional evidence for the significance of genetic management units within oceanic populations of humpback whales.

Strong maternal fidelity and natal philopatry shape genetic structure in North Pacific humpback whales

Abstract: We quantified the relative influence of maternal fidelity to feeding grounds and natal fidelity to breeding grounds on the population structure of humpback whales Megaptera novae - angliae based on an ocean-wide survey of mitochondrial (mt) DNA diversity in the North Pacific. For 2193 biopsy samples collected from whales in 10 feeding regions and 8 breeding regions dur- ing the winter and summer of 2004 to 2006, we first used microsatellite genotyping (average, 9.5 loci) to identify replicate samples. From sequences of the mtDNA control region (500 bp) we identified 28 unique haplotypes from 30 variable sites. Haplotype frequencies differed markedly among feeding regions (overall FST = 0.121, ΦST = 0.178, p < 0.0001), supporting previous evidence of strong maternal fidelity. Haplotype frequencies also differed markedly among breeding regions (overall FST = 0.093, ΦST = 0.106, p < 0.0001), providing evidence of strong natal fidelity. Although sex-biased dispersal was not evident, differentiation of microsatellite allele frequencies was weak compared to differentiation of mtDNA haplotypes, suggesting male-biased gene flow. Feeding and breeding regions showed significant differences in haplotype frequencies, even for regions known to be strongly connected by patterns of individual migration. Thus, the influence of migra- tory fidelity seems to operate somewhat independently on feeding and breeding grounds over an evolutionary time scale. This results in a complex population structure and the potential to define multiple units to conserve in either seasonal habitat.

Humpback whale abundance in the North Pacific estimated by photographic capture-recapture with bias correction from simulation studies

Abstract: We estimated the abundance of humpback whales in the North Pacific by capture-recapture methods using over 18,000 fluke identification photographs collected in 2004–2006. Our best estimate of abundance was 21,808 (CV = 0.04). We estimated the biases in this value using a simulation model. Births and deaths, which violate the assumption of a closed population, resulted in a bias of +5.2%, exclusion of calves in samples resulted in a bias of −10.5%, failure to achieve random geographic sampling resulted in a bias of −0.4%, and missed matches resulted in a bias of +9.3%. Known sex-biased sampling favoring males in breeding areas did not add significant bias if both sexes are proportionately sampled in the feeding areas. Our best estimate of abundance was 21,063 after accounting for a net bias of +3.5%. This estimate is likely to be lower than the true abundance due to two additional sources of bias: individual heterogeneity in the probability of being sampled (unquantified) and the likely existence of an unknown and unsampled breeding area (−8.7%). Results confirm that the overall humpback whale population in the North Pacific has continued to increase and is now greater than some prior estimates of prewhaling abundance.

Influence of Diet On the Distribtion of Nitrogen Isotopes in Animals

Abstract: The influence of diet on the distribution of nitrogen isotopes in animals was investigated by analyzing animals grown in the laboratory on diets of constant nitrogen isotopic composition. The isotopic composition of the nitrogen in an animal reflects the nitrogen isotopic composition of its diet. The δ^(15)N values of the whole bodies of animals are usually more positive than those of their diets. Different individuals of a species raised on the same diet can have significantly different δ^(15)N values. The variability of the relationship between the δ^(15)N values of animals and their diets is greater for different species raised on the same diet than for the same species raised on different diets. Different tissues of mice are also enriched in ^(15)N relative to the diet, with the difference between the δ^(15)N values of a tissue and the diet depending on both the kind of tissue and the diet involved. The δ^(15)N values of collagen and chitin, biochemical components that are often preserved in fossil animal remains, are also related to the δ^(15)N value of the diet. The dependence of the δ^(15)N values of whole animals and their tissues and biochemical components on the δ^(15)N value of diet indicates that the isotopic composition of animal nitrogen can be used to obtain information about an animal's diet if its potential food sources had different δ^(15)N values. The nitrogen isotopic method of dietary analysis probably can be used to estimate the relative use of legumes vs non-legumes or of aquatic vs terrestrial organisms as food sources for extant and fossil animals. However, the method probably will not be applicable in those modern ecosystems in which the use of chemical fertilizers has influenced the distribution of nitrogen isotopes in food sources. The isotopic method of dietary analysis was used to reconstruct changes in the diet of the human population that occupied the Tehuacan Valley of Mexico over a 7000 yr span. Variations in the δ^(15)C and δ^(15)N values of bone collagen suggest that C_4 and/or CAM plants (presumably mostly corn) and legumes (presumably mostly beans) were introduced into the diet much earlier than suggested by conventional archaeological analysis.

Genetic Data Analysis

Abstract: LEARNING The objectives of BIOS 781 are to present: OBJECTIVES: 1. basic population and quantitative genetic principles, including classical genetics, chromosomal theory of inheritance, and meiotic recombination 2. an exposure to QTL mapping methods of complex quantitative traits and linkage methods to detect co-segregation with disease 3. methods for assessing marker-disease linkage disequilibrium, including case-control approaches 4. methods for genome-wide association and stratification control.

Dietary specialization in two sympatric populations of killer whales (Orcinus orca) in coastal British Columbia and adjacent waters

Abstract: Two forms of killer whale (Orcinus orca), resident and transient, occur sympatrically in coastal waters of British Columbia, Washington State, and southeastern Alaska. The two forms do not mix, and differ in seasonal distribution, social structure, and behaviour. These distinctions have been attributed to apparent differences in diet, although no comprehensive comparative analysis of the diets of the two forms had been undertaken. Here we present such an analysis, based on field observations of predation and on the stomach contents of stranded killer whales collected over a 20-year period. In total, 22 species of fish and 1 species of squid were documented in the diet of resident-type killer whales; 12 of these are previously unrecorded as prey of O. orca. Despite the diversity of fish species taken, resident whales have a clear preference for salmon prey. In field observations of feeding, 96% of fish taken were salmonids. Six species of salmonids were identified from prey fragments, with chinook salmon (Oncorhynchus tshawytscha ) being the most common. The stomach contents of stranded residents also indicated a preference for chinook salmon. On rare occasions, resident whales were seen to harass marine mammals, but no kills were confirmed and no mammalian remains were found in the stomachs of stranded residents. Transient killer whales were observed to prey only on pinnipeds, cetaceans, and seabirds. Six mammal species were taken, with over half of observed attacks involving harbour seals (Phoca vitulina). Seabirds do not appear to represent a significant prey resource. This study thus reveals the existence of strikingly divergent prey preferences of resident and transient killer whales, which are reflected in distinctive foraging strategies and related sociobiological traits of these sympatric populations. 1471

Marine litter distribution and density in European seas, from the shelves to deep basins.

Abstract: Anthropogenic litter is present in all marine habitats, from beaches to the most remote points in the oceans. On the seafloor, marine litter, particularly plastic, can accumulate in high densities with deleterious consequences for its inhabitants. Yet, because of the high cost involved with sampling the seafloor, no large-scale assessment of distribution patterns was available to date. Here, we present data on litter distribution and density collected during 588 video and trawl surveys across 32 sites in European waters. We found litter to be present in the deepest areas and at locations as remote from land as the Charlie-Gibbs Fracture Zone across the Mid-Atlantic Ridge. The highest litter density occurs in submarine canyons, whilst the lowest density can be found on continental shelves and on ocean ridges. Plastic was the most prevalent litter item found on the seafloor. Litter from fishing activities (derelict fishing lines and nets) was particularly common on seamounts, banks, mounds and ocean ridges. Our results highlight the extent of the problem and the need for action to prevent increasing accumulation of litter in marine environments.