J
Jaqueline Goes de Jesus
Researcher at University of São Paulo
Publications - 54
Citations - 4822
Jaqueline Goes de Jesus is an academic researcher from University of São Paulo. The author has contributed to research in topics: Medicine & Biology. The author has an hindex of 19, co-authored 46 publications receiving 2776 citations. Previous affiliations of Jaqueline Goes de Jesus include Oswaldo Cruz Foundation & University of Birmingham.
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Journal ArticleDOI
Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil.
Nuno R. Faria,Thomas A. Mellan,Charles Whittaker,Ingra Morales Claro,Darlan da Silva Candido,Darlan da Silva Candido,Swapnil Mishra,Myuki A E Crispim,Flavia C. S. Sales,Iwona Hawryluk,John T. McCrone,Ruben J.G. Hulswit,Lucas A M Franco,Mariana S. Ramundo,Jaqueline Goes de Jesus,Pamela S Andrade,Thais M. Coletti,Giulia M. Ferreira,Camila A. M. Silva,Erika R. Manuli,Rafael Henrique Moraes Pereira,Pedro S. Peixoto,Moritz U. G. Kraemer,Nelson Gaburo,Cecilia da C. Camilo,Henrique Hoeltgebaum,William Marciel de Souza,Esmenia C. Rocha,Leandro Marques de Souza,Mariana C. Pinho,Leonardo José Tadeu de Araújo,Frederico S V Malta,Aline B. de Lima,Joice do P. Silva,Danielle A G Zauli,Alessandro C. S. Ferreira,Ricardo P Schnekenberg,Daniel J Laydon,Patrick G T Walker,Hannah M. Schlüter,Ana L. P. dos Santos,Maria S. Vidal,Valentina S. Del Caro,Rosinaldo M. F. Filho,Helem M. dos Santos,Renato Santana Aguiar,José Luiz Proença-Módena,Bruce Walker Nelson,James A. Hay,Melodie Monod,Xenia Miscouridou,Helen Coupland,Raphael Sonabend,Michaela A. C. Vollmer,Axel Gandy,Carlos A. Prete,Vitor H. Nascimento,Marc A. Suchard,Thomas A. Bowden,Sergei L Kosakovsky Pond,Chieh-Hsi Wu,Oliver Ratmann,Neil M. Ferguson,Christopher Dye,Nicholas J. Loman,Philippe Lemey,Andrew Rambaut,Nelson Abrahim Fraiji,Maria Perpétuo Socorro Sampaio Carvalho,Oliver G. Pybus,Oliver G. Pybus,Seth Flaxman,Samir Bhatt,Samir Bhatt,Ester Cerdeira Sabino +74 more
TL;DR: In this article, the authors used a two-category dynamical model that integrates genomic and mortality data to estimate that P.1 may be 1.7-to 2.4-fold more transmissible and that previous (non-P.1) infection provides 54 to 79% of the protection against infection with P.
Journal ArticleDOI
Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples
Joshua Quick,Nathan D. Grubaugh,Steven T. Pullan,Ingra Morales Claro,Andrew D. Smith,Karthik Gangavarapu,Glenn Oliveira,Refugio Robles-Sikisaka,Thomas F. Rogers,Thomas F. Rogers,Nathan Beutler,Dennis R. Burton,Lia Laura Lewis-Ximenez,Jaqueline Goes de Jesus,Marta Giovanetti,Marta Giovanetti,Sarah C. Hill,Allison Black,Allison Black,Trevor Bedford,Miles W. Carroll,Márcio Roberto Teixeira Nunes,Luiz Carlos Junior Alcantara,Ester Cerdeira Sabino,Sally A. Baylis,Nuno R. Faria,Matthew Loose,Jared T. Simpson,Oliver G. Pybus,Kristian G. Andersen,Kristian G. Andersen,Nicholas J. Loman +31 more
TL;DR: A protocol for generating coding-sequence-complete genomes, comprising an online primer design tool, a novel multiplex PCR enrichment protocol, optimized library preparation methods for the portable MinION sequencer and the Illumina range of instruments, and a bioinformatics pipeline for generating consensus sequences.
Journal ArticleDOI
An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar
Nathan D. Grubaugh,Nathan D. Grubaugh,Karthik Gangavarapu,Joshua Quick,Nathaniel L. Matteson,Jaqueline Goes de Jesus,Jaqueline Goes de Jesus,Bradley J. Main,Amanda L Tan,Lauren M. Paul,Doug E. Brackney,Saran Grewal,Nikos Gurfield,Koen K. A. Van Rompay,Sharon Isern,Scott F. Michael,Lark L. Coffey,Nicholas J. Loman,Kristian G. Andersen,Kristian G. Andersen +19 more
TL;DR: The utility of PrimalSeq is demonstrated by measuring Zika and West Nile virus diversity from varied sample types and the accumulation of genetic diversity is influenced by experimental and biological systems.
Journal ArticleDOI
Nanopore native RNA sequencing of a human poly(A) transcriptome.
Rachael E. Workman,Alison D. Tang,Paul S. Tang,Miten Jain,John R. Tyson,Roham Razaghi,Philip C. Zuzarte,Timothy Gilpatrick,Alexander Payne,Joshua Quick,Norah Sadowski,Nadine Holmes,Jaqueline Goes de Jesus,Karen Jones,Cameron M. Soulette,Terrance P. Snutch,Nicholas J. Loman,Benedict Paten,Matthew Loose,Jared T. Simpson,Jared T. Simpson,Hugh E. Olsen,Angela N. Brooks,Mark Akeson,Winston Timp +24 more
TL;DR: This study generated 9.9 million aligned sequence reads for the human cell line GM12878, using thirty MinION flow cells at six institutions to identify 33,984 plausible RNA isoforms and describes strategies for assessing 3′ poly(A) tail length, base modifications and transcript haplotypes.
Journal ArticleDOI
Evolution and epidemic spread of SARS-CoV-2 in Brazil.
Darlan da Silva Candido,Darlan da Silva Candido,Ingra Morales Claro,Jaqueline Goes de Jesus,William Marciel de Souza,Filipe R. R. Moreira,Simon Dellicour,Simon Dellicour,Thomas A. Mellan,Louis du Plessis,Rafael Henrique Moraes Pereira,Flavia C. S. Sales,Erika R. Manuli,Julien Thézé,Luiz Carlos de Almeida,Mariane Talon de Menezes,Carolina M. Voloch,Marcílio Jorge Fumagalli,Thais M. Coletti,Camila A. M. Silva,Mariana S. Ramundo,Mariene R. Amorim,Henrique Hoeltgebaum,Swapnil Mishra,Mandev S. Gill,Luiz Max Carvalho,Lewis F Buss,Carlos A. Prete,Jordan Ashworth,Helder I. Nakaya,Pedro S. Peixoto,Oliver J. Brady,Samuel M. Nicholls,Amilcar Tanuri,Átila Duque Rossi,Carlos Kaue Vieira Braga,Alexandra L. Gerber,Ana Paula de C Guimarães,Nelson Gaburo,Cecila Salete Alencar,Alessandro C. S. Ferreira,Cristiano Xavier Lima,José Eduardo Levi,Celso Francisco Hernandes Granato,Giulia M. Ferreira,Ronaldo da Silva Francisco,Fabiana Granja,Fabiana Granja,Márcia Teixeira Garcia,Maria Luiza Moretti,Mauricio W. Perroud,Terezinha M. P. P. Castineiras,Carolina S. Lazari,Sarah C. Hill,Sarah C. Hill,Andreza Aruska de Souza Santos,Camila L. Simeoni,Julia Forato,Andrei C. Sposito,Angelica Zaninelli Schreiber,Magnun N. N. Santos,Camila Zolini de Sá,Renan P. Souza,Luciana C. Resende-Moreira,Mauro M. Teixeira,Josy Hubner,Patricia Asfora Falabella Leme,Rennan G. Moreira,Maurício Lacerda Nogueira,Neil M. Ferguson,Silvia Figueiredo Costa,José Luiz Proença-Módena,Ana Tereza Ribeiro de Vasconcelos,Samir Bhatt,Philippe Lemey,Chieh-Hsi Wu,Andrew Rambaut,Nicholas J. Loman,Renato Santana Aguiar,Oliver G. Pybus,Ester Cerdeira Sabino,Ester Cerdeira Sabino,Ester Cerdeira Sabino,Nuno R. Faria,Nuno R. Faria,Nuno R. Faria +85 more
TL;DR: New light is shed on the epidemic transmission and evolutionary trajectories of SARS-CoV-2 lineages in Brazil and evidence that current interventions remain insufficient to keep virus transmission under control in this country is provided.