J
Jeffrey Rogers
Researcher at Baylor College of Medicine
Publications - 227
Citations - 10895
Jeffrey Rogers is an academic researcher from Baylor College of Medicine. The author has contributed to research in topics: Population & Genome. The author has an hindex of 50, co-authored 205 publications receiving 9557 citations. Previous affiliations of Jeffrey Rogers include Yale University & Wilmington University.
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Journal ArticleDOI
Evolutionary and biomedical insights from the rhesus macaque genome
Richard A. Gibbs,Jeffrey Rogers,Michael G. Katze,Roger E. Bumgarner,George M. Weinstock,Elaine R. Mardis,Karin A. Remington,Robert L. Strausberg,J. Craig Venter,Richard K. Wilson,Mark A. Batzer,Carlos Bustamante,Evan E. Eichler,Matthew W. Hahn,Ross C. Hardison,Kateryna D. Makova,Webb Miller,Aleksandar Milosavljevic,Robert E. Palermo,Adam Siepel,James M. Sikela,Tony Attaway,Stephanie Bell,Kelly E. Bernard,Christian J. Buhay,Mimi N. Chandrabose,Marvin Diep Dao,Clay Davis,Kimberly D. Delehaunty,Yan Ding,Huyen Dinh,Shannon Dugan-Rocha,Lucinda Fulton,Ramatu Ayiesha Gabisi,Toni T. Garner,Jennifer Godfrey,Alicia Hawes,Judith Hernandez,Sandra Hines,Michael Holder,Jennifer Hume,Shalini N. Jhangiani,Vandita Joshi,Ziad Khan,Ewen F. Kirkness,Andrew Cree,R. Gerald Fowler,Sandra L. Lee,Lora Lewis,Zhangwan Li,Yih-shin Liu,Stephanie M. Moore,Donna M. Muzny,Lynne V. Nazareth,Dinh Ngoc Ngo,Geoffrey Okwuonu,Grace Pai,David A. Parker,Heidie A. Paul,Cynthia Pfannkoch,Craig Pohl,Yu-Hui Rogers,San Juana Ruiz,Aniko Sabo,Jireh Santibanez,Brian W. Schneider,Scott M. Smith,Erica Sodergren,Amanda F. Svatek,Teresa Utterback,Selina Vattathil,Wesley C. Warren,Courtney Sherell White,Asif T. Chinwalla,Yucheng Feng,Aaron L. Halpern,LaDeana W. Hillier,Xiaoqiu Huang,Patrick Minx,Joanne O. Nelson,Kymberlie H. Pepin,Xiang Qin,Granger G. Sutton,Eli Venter,Brian P. Walenz,John W. Wallis,Kim C. Worley,Shiaw-Pyng Yang,Steven J. M. Jones,Marco A. Marra,Mariano Rocchi,Jacqueline E. Schein,Robert Baertsch,Laura Clarke,Miklós Csürös,Jarret Glasscock,R. Alan Harris,Paul Havlak,Andrew R. Jackson,Huaiyang Jiang,Yue Liu,David N. Messina,Yufeng Shen,Henry Xing-Zhi Song,Todd Wylie,Lan Zhang,Ewan Birney,Kyudong Han,Miriam K. Konkel,Jungnam Lee,Arian F.A. Smit,Brygg Ullmer,Hui Wang,Jinchuan Xing,Jinchuan Xing,Richard Burhans,Ze Cheng,John E. Karro,Jian Ma,Brian J. Raney,Xinwei She,Michael J. Cox,Jeffery P. Demuth,Laura J. Dumas,Sang-Gook Han,Janet A. Hopkins,Anis Karimpour-Fard,Young Ho Kim,Jonathan R. Pollack,Tomas Vinar,Charles Addo-Quaye,Jeremiah D. Degenhardt,Alexandra Denby,Melissa J. Hubisz,Amit Indap,Carolin Kosiol,Bruce T. Lahn,Heather A. Lawson,Alison Marklein,Rasmus Nielsen,Eric J. Vallender,Andrew G. Clark,Betsy Ferguson,Ryan D. Hernandez,Kashif Hirani,Hildegard Kehrer-Sawatzki,Jessica Kolb,Shobha Patil,Ling-Ling Pu,Yanru Ren,David Glenn Smith,David A. Wheeler,Ian Schenck,Edward V. Ball,Rui Chen,David Neil Cooper,Belinda Giardine,Fan Hsu,W. James Kent,Arthur M. Lesk,David L. Nelson,William E. O'Brien,Kay Prüfer,Peter D. Stenson,James C. Wallace,Hui Ke,Xiaoming Liu,Peng Wang,Andy Peng Xiang,Fan Yang,Galt P. Barber,David Haussler,David Haussler,Donna Karolchik,Andrew D. Kern,Robert M. Kuhn,Kayla E. Smith,Ann S. Zwieg +177 more
TL;DR: The genome sequence of an Indian-origin Macaca mulatta female is determined and compared with chimpanzees and humans to reveal the structure of ancestral primate genomes and to identify evidence for positive selection and lineage-specific expansions and contractions of gene families.
Journal ArticleDOI
Comparative and demographic analysis of orang-utan genomes.
Devin P. Locke,LaDeana W. Hillier,Wesley C. Warren,Kim C. Worley,Lynne V. Nazareth,Donna M. Muzny,Shiaw-Pyng Yang,Zhengyuan Wang,Asif T. Chinwalla,Patrick Minx,Makedonka Mitreva,Lisa Cook,Kim D. Delehaunty,Catrina Fronick,Heather Schmidt,Lucinda Fulton,Robert S. Fulton,Joanne O. Nelson,Vincent Magrini,Craig Pohl,Tina Graves,Chris Markovic,Andy Cree,Huyen Dinh,Jennifer Hume,Christie Kovar,Gerald R. Fowler,Gerton Lunter,Gerton Lunter,Stephen Meader,Andreas Heger,Chris P. Ponting,Tomas Marques-Bonet,Tomas Marques-Bonet,Can Alkan,Lin Chen,Ze Cheng,Jeffrey M. Kidd,Evan E. Eichler,Evan E. Eichler,Simon D. M. White,Stephen M. J. Searle,Albert J. Vilella,Yuan Chen,Paul Flicek,Jian Ma,Jian Ma,Brian J. Raney,Bernard B. Suh,Richard Burhans,Javier Herrero,David Haussler,Rui Faria,Rui Faria,Olga Fernando,Olga Fernando,Fleur Darré,Domènec Farré,Elodie Gazave,Meritxell Oliva,Arcadi Navarro,Roberta Roberto,Oronzo Capozzi,Nicoletta Archidiacono,Giuliano Della Valle,Stefania Purgato,Mariano Rocchi,Miriam K. Konkel,Jerilyn A. Walker,Brygg Ullmer,Mark A. Batzer,Arian F.A. Smit,Robert Hubley,Claudio Casola,Daniel R. Schrider,Matthew W. Hahn,Víctor Quesada,Xose S. Puente,Gonzalo R. Ordóñez,Carlos López-Otín,Tomas Vinar,Brona Brejova,Aakrosh Ratan,Robert S. Harris,Webb Miller,Carolin Kosiol,Heather A. Lawson,Vikas Taliwal,André L. Martins,Adam Siepel,Arindam RoyChoudhury,Xin Ma,Jeremiah D. Degenhardt,Carlos Bustamante,Ryan N. Gutenkunst,Thomas Mailund,Julien Y. Dutheil,Asger Hobolth,Mikkel H. Schierup,Oliver A. Ryder,Yuko Yoshinaga,Pieter J. de Jong,George M. Weinstock,Jeffrey Rogers,Elaine R. Mardis,Richard A. Gibbs,Richard K. Wilson +106 more
TL;DR: The orang-utan species, Pongo abelii and Pongo pygmaeus, are the most phylogenetically distant great apes from humans, thereby providing an informative perspective on hominid evolution and a primate polymorphic neocentromere, found in both Pongo species are described.
Journal ArticleDOI
Why primate models matter
Kimberley A. Phillips,Karen L. Bales,Karen L. Bales,John P. Capitanio,John P. Capitanio,Alan J Conley,Paul W. Czoty,Bert A. 't Hart,William D. Hopkins,William D. Hopkins,Shiu Lok Hu,Lisa A. Miller,Lisa A. Miller,Michael A. Nader,Peter W. Nathanielsz,Jeffrey Rogers,Jeffrey Rogers,Carol A. Shively,Mary Lou Voytko +18 more
TL;DR: Key areas in biomedicine where primate models have been, and continue to be, essential for advancing fundamental knowledge in biomedical and biological research are reviewed.
Journal ArticleDOI
Gibbon genome and the fast karyotype evolution of small apes
Lucia Carbone,R. Alan Harris,Sante Gnerre,Krishna R. Veeramah,Krishna R. Veeramah,Belen Lorente-Galdos,John Huddleston,John Huddleston,Thomas J. Meyer,Javier Herrero,Christian Roos,Bronwen Aken,Fabio Anaclerio,Nicoletta Archidiacono,Carl Baker,Daniel Barrell,Mark A. Batzer,Kathryn Beal,Antoine Blancher,Craig L. Bohrson,Markus Brameier,Michael S. Campbell,Oronzo Capozzi,Claudio Casola,Giorgia Chiatante,Andrew Cree,Annette Damert,Pieter J. de Jong,Laura Dumas,Marcos Fernandez-Callejo,Paul Flicek,Nina V. Fuchs,Gut I,Gut M,Matthew W. Hahn,Jessica Hernandez-Rodriguez,LaDeana W. Hillier,Robert Hubley,Bianca Ianc,Zsuzsanna Izsvák,Nina G. Jablonski,Laurel Johnstone,Anis Karimpour-Fard,Miriam K. Konkel,Dennis Kostka,Nathan H. Lazar,Sandra L. Lee,Lora Lewis,Yue Liu,Devin P. Locke,Swapan Mallick,Fernando L. Mendez,Fernando L. Mendez,Matthieu Muffato,Lynne V. Nazareth,Kimberly A. Nevonen,Majesta O'Bleness,Cornelia Ochis,Duncan T. Odom,Katherine S. Pollard,Javier Quilez,David Reich,Mariano Rocchi,Gerald G. Schumann,Stephen M. J. Searle,James M. Sikela,Gabriella Skollar,Arian F.A. Smit,Kemal Sonmez,Boudewijn F.H. Ten Hallers,Elizabeth Terhune,Gregg W.C. Thomas,Brygg Ullmer,Mario Ventura,Jerilyn A. Walker,Jeffrey D. Wall,Lutz Walter,Michelle C Ward,Michelle C Ward,Sarah J. Wheelan,Christopher W. Whelan,Christopher W. Whelan,Simon D. M. White,Larry J. Wilhelm,August E. Woerner,Mark Yandell,Baoli Zhu,Michael F. Hammer,Tomas Marques-Bonet,Tomas Marques-Bonet,Evan E. Eichler,Evan E. Eichler,Lucinda Fulton,Catrina Fronick,Donna M. Muzny,Wesley C. Warren,Kim C. Worley,Jeffrey Rogers,Richard K. Wilson,Richard A. Gibbs +99 more
TL;DR: The assembly and analysis of a northern white-cheeked gibbon genome is presented and the propensity for a gibbon-specific retrotransposon (LAVA) to insert into chromosome segregation genes and alter transcription by providing a premature termination site is described, suggesting a possible molecular mechanism for the genome plasticity of the gibbon lineage.
Journal ArticleDOI
A comprehensive transcriptional map of primate brain development
Trygve E. Bakken,Jeremy A. Miller,Songlin Ding,Susan M. Sunkin,Kimberly A. Smith,Lydia Ng,Aaron Szafer,Rachel A. Dalley,Joshua J. Royall,Tracy Lemon,Sheila Shapouri,Kaylynn Aiona,James M. Arnold,Jeffrey L. Bennett,Darren Bertagnolli,Kristopher Bickley,Andrew F. Boe,Krissy Brouner,Stephanie Butler,Emi J. Byrnes,Shiella Caldejon,Anita Carey,Shelby Cate,Mike Chapin,Jefferey Chen,Nick Dee,Tsega Desta,Tim A. Dolbeare,Nadia Dotson,Amanda Ebbert,Erich Fulfs,Garrett Gee,Terri L. Gilbert,Jeff Goldy,Lindsey Gourley,Ben W. Gregor,Guangyu Gu,Jon Hall,Zeb Haradon,David R. Haynor,Nika Hejazinia,Anna Hoerder-Suabedissen,Robert Howard,Jay Jochim,Marty Kinnunen,Ali Kriedberg,Chihchau L. Kuan,Christopher Lau,Changkyu Lee,Felix Lee,Lon T. Luong,Naveed Mastan,Ryan May,Jose Melchor,Nerick Mosqueda,Erika Mott,Kiet Ngo,Julie Nyhus,Aaron Oldre,Eric Olson,Jody Parente,Patrick D. Parker,Sheana Parry,Julie Pendergraft,Lydia Potekhina,Melissa Reding,Zackery L. Riley,Tyson Roberts,Brandon Rogers,Kate Roll,David Rosen,David Sandman,Melaine Sarreal,Nadiya V. Shapovalova,Shu Shi,Nathan Sjoquist,Andy J. Sodt,Robbie Townsend,Lissette Velasquez,Udi Wagley,Wayne Wakeman,Cassandra White,Crissa Bennett,Jennifer Wu,R.D. Young,Brian L. Youngstrom,Paul Wohnoutka,Richard A. Gibbs,Jeffrey Rogers,John G. Hohmann,Michael Hawrylycz,Robert F. Hevner,Zoltán Molnár,John W. Phillips,Chinh Dang,Allan R. Jones,David G. Amaral,Amy Bernard,Ed S. Lein +98 more
TL;DR: A high-resolution transcriptional atlas of rhesus monkey (Macaca mulatta) brain development is described that combines dense temporal sampling of prenatal and postnatal periods with fine anatomical division of cortical and subcortical regions associated with human neuropsychiatric disease.