J
Jeffrey Ross-Ibarra
Researcher at University of California, Davis
Publications - 176
Citations - 15023
Jeffrey Ross-Ibarra is an academic researcher from University of California, Davis. The author has contributed to research in topics: Population & Genome. The author has an hindex of 48, co-authored 165 publications receiving 12177 citations. Previous affiliations of Jeffrey Ross-Ibarra include University of Missouri & University of California, Berkeley.
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Journal ArticleDOI
Improved maize reference genome with single-molecule technologies
Yinping Jiao,Paul Peluso,Jinghua Shi,Tiffany Y. Liang,Michelle C. Stitzer,Bo Wang,Michael S. Campbell,Joshua C. Stein,Xuehong Wei,Chen-Shan Chin,Katherine E. Guill,Michael Regulski,Sunita Kumari,Andrew Olson,Jonathan I. Gent,Kevin L. Schneider,Thomas K. Wolfgruber,Michael R. May,Nathan M. Springer,Eric Antoniou,W. Richard McCombie,Gernot G. Presting,Michael D. McMullen,Jeffrey Ross-Ibarra,R. Kelly Dawe,Alex Hastie,David R. Rank,Doreen Ware,Doreen Ware +28 more
TL;DR: The assembly and annotation of a reference genome of maize is reported, using single-molecule real-time sequencing and high-resolution optical mapping to identify transposable element lineage expansions that are unique to maize.
Journal ArticleDOI
Comparative population genomics of maize domestication and improvement
Matthew B. Hufford,Xun Xu,Joost van Heerwaarden,Tanja Pyhäjärvi,Jer Ming Chia,Reed A. Cartwright,Robert J. Elshire,Jeffrey C. Glaubitz,Kate E. Guill,Kate E. Guill,Shawn M. Kaeppler,Jinsheng Lai,Peter L. Morrell,Laura M. Shannon,Chi Song,Nathan M. Springer,Ruth A. Swanson-Wagner,Peter Tiffin,Jun Wang,Gengyun Zhang,John Doebley,Michael D. McMullen,Michael D. McMullen,Doreen Ware,Doreen Ware,Edward S. Buckler,Edward S. Buckler,Shuang Yang,Jeffrey Ross-Ibarra +28 more
TL;DR: A comprehensive assessment of the evolution of modern maize based on the genome-wide resequencing of 75 wild, landrace and improved maize lines finds evidence of recovery of diversity after domestication, likely introgression from wild relatives, and evidence for stronger selection during domestication than improvement.
Journal ArticleDOI
Genetic Data Analysis II. Methods for Discrete Population Genentic Data
TL;DR: Mistletoe lacks an author’s index, limiting the value of the book for anyone looking for specific papers, and will be of value to ethnobotanists, anyone interested in alternative medicines, and students of mistletoes and parasitic plants.
Journal ArticleDOI
A first-generation haplotype map of maize
Michael A. Gore,Jer Ming Chia,Robert J. Elshire,Qi Sun,Elhan S. Ersoz,Bonnie L. Hurwitz,Jason A. Peiffer,Michael D. McMullen,Michael D. McMullen,George Grills,Jeffrey Ross-Ibarra,Doreen Ware,Doreen Ware,Edward S. Buckler,Edward S. Buckler +14 more
TL;DR: A survey of genetic diversity in maize found hundreds of selective sweeps and highly differentiated regions that probably contain loci that are key to geographic adaptation and provide a foundation for uniting breeding efforts across the world and for dissecting complex traits through genome-wide association studies.
Journal ArticleDOI
Maize HapMap2 identifies extant variation from a genome in flux
Jer Ming Chia,Chi Song,Peter J. Bradbury,Peter J. Bradbury,Denise E. Costich,Denise E. Costich,Natalia de Leon,Natalia de Leon,John Doebley,Robert J. Elshire,Brandon S. Gaut,Laura Geller,Jeffrey C. Glaubitz,Michael A. Gore,Kate E. Guill,Kate E. Guill,James B. Holland,James B. Holland,Matthew B. Hufford,Jinsheng Lai,Meng Li,Xin Liu,Yanli Lu,Richard W. McCombie,Rebecca Nelson,Jesse Poland,Jesse Poland,Boddupalli M. Prasanna,Tanja Pyhäjärvi,Tingzhao Rong,Rajandeep S. Sekhon,Rajandeep S. Sekhon,Qi Sun,Maud I. Tenaillon,Maud I. Tenaillon,Feng Tian,Jun Wang,Xun Xu,Zhiwu Zhang,Shawn M. Kaeppler,Shawn M. Kaeppler,Jeffrey Ross-Ibarra,Michael D. McMullen,Michael D. McMullen,Edward S. Buckler,Edward S. Buckler,Gengyun Zhang,Yunbi Xu,Doreen Ware,Doreen Ware +49 more
TL;DR: It is found that structural variations are pervasive in the Z. mays genome and are enriched at loci associated with important traits and the larger Tripsacum genome can be explained by transposable element abundance rather than an allopolyploid origin.