J
Jeroen Raes
Researcher at Katholieke Universiteit Leuven
Publications - 293
Citations - 85097
Jeroen Raes is an academic researcher from Katholieke Universiteit Leuven. The author has contributed to research in topics: Microbiome & Medicine. The author has an hindex of 84, co-authored 240 publications receiving 66805 citations. Previous affiliations of Jeroen Raes include Flanders Institute for Biotechnology & Université catholique de Louvain.
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Journal ArticleDOI
Low eukaryotic viral richness is associated with faecal microbiota transplantation success in patients with UC.
Nádia Conceição-Neto,Ward Deboutte,Tim Dierckx,Kathleen Machiels,Jun Wang,Kwe Claude Yinda,Piet Maes,Marc Van Ranst,Marie Joossens,Jeroen Raes,Severine Vermeire,Jelle Matthijnssens +11 more
TL;DR: Irrespective of their outcome, no statistical differences were observed in phageome richness between patients with UC and healthy donors at any time point, in contrast to other faecal microbiota transplantation treatments.
Journal ArticleDOI
Prebiotic Wheat Bran Fractions Induce Specific Microbiota Changes.
Kevin D'hoe,Lorenza Conterno,Francesca Fava,Gwen Falony,Sara Vieira-Silva,Joan Vermeiren,Kieran Tuohy,Jeroen Raes,Jeroen Raes +8 more
TL;DR: It is found that incubation conditions favor the growth of Proteobacteria such as Escherichia and Bilophila by combining amplicon-based community profiling with a fluorescent in situ hybridization (FISH) approach, which opens perspectives for the development of aleurone as a complementary prebiotic selectively targeting colon butyrate producers.
Journal ArticleDOI
Prediction and identification of sequences coding for orphan enzymes using genomic and metagenomic neighbours
Takuji Yamada,Alison S. Waller,Jeroen Raes,Aleksej Zelezniak,Nadia Perchat,Nadia Perchat,Nadia Perchat,Alain Perret,Alain Perret,Alain Perret,Marcel Salanoubat,Marcel Salanoubat,Marcel Salanoubat,Kiran Raosaheb Patil,Jean Weissenbach,Jean Weissenbach,Jean Weissenbach,Peer Bork +17 more
TL;DR: A global framework that utilizes the pathway and (meta)genomic neighbour information to assign candidate sequences to orphan enzymes and was able to expand the models by on average 8%, with a considerable change in the flux connectivity patterns and improved essentiality prediction.
Journal ArticleDOI
Protein function space: viewing the limits or limited by our view?
TL;DR: Until the limits of protein space will remain obscured, the functional coverage of protein sequences can be investigated using computational methods, especially given the massive amount of data being generated by large-scale environmental sequencing (metagenomics).
Journal ArticleDOI
Gut microbiota dynamics and uraemic toxins: one size does not fit all
Marie Joossens,Karoline Faust,Tessa Gryp,Anh Thi Loan Nguyen,Jun Wang,Sunny Eloot,Eva Schepers,Annemieke Dhondt,Anneleen Pletinck,Sara Vieira-Silva,Gwen Falony,Mario Vaneechoutte,Raymond Vanholder,Wim Van Biesen,Geert Huys,Jeroen Raes,Griet Glorieux +16 more
TL;DR: Within-patient analyses showed that variations in peripheral levels of p -cresyl conjugates showed that the role of gut microbiota in the generation of precursors of specific uraemic toxins which are associated with negative outcomes in these patients was studied.